RNA id: AMCG00018778


Basic Information

Item Value
RNA id AMCG00018778
length 2882
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00018778
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20303764 ~ 20309717 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGAGGTGGATTTTGGGGACAGTGAGCTGTTCGAGCAGTTAGACGAAAACAAACCTGTCTCGACCCACATTCGGTTCGAAGATGAAGGAGAAACTCAAGATGAGATCCAGGAGCTCCGGGAGAAATTGGAAGAATACGAGGAAACGATTAGCCGCCTGAAAGCAGAGAATATCCTTCTtGGGTTAAGAATTGAAGACACTAACTTTGATGGGCCACTGCTGCAGATTCTATTTACCAACAATGCTATCTCAAAGCAGTACCATCAAGAAATCGAAGACTGTATTTTCAGCCTAATACAGAAACATGAACAGGAGGCAAATGAAAAGGAATATTCCTCGTTTCACCTCAAACCTCAGCCATCAAGTTTTGTGCTGGAAGAGAACCATAAAGTGAAGACgtccaatacaatacaaaaaatcaaGGATGCTTTTAGCgttGTCGGCAGTGTTCTTTATTTCACCAACTTTTGTCTTGACAAACTTGGACAGCCTTTGTTGAATGAGAATCCCCAACTGACTGATGGATGGGAGATTCCCAAATACCAGCAAGTGTTTGGCCAGATTATATCTCTTGATGGACAGGATGTGCAGATCAAGGAGAAAAGACCAAAACCTTGCTGCTTTAACTGTGGTTCAGAGGAGCACCAGTTAAAAGACTGtccaaagCCAAGGGACATGTCTCGAATCAATGAGAAGAGAAAGGAGTTTTCTCAAAACAGCAATGTAAGCAACCAGCGATATCATGCTGAAGAAGTGGAGGAGAGGTTTGGGAAATACAAACCAGGAACCATGAGTGAAGAGCTGCAAGAAGCACTTGGTCTTGAAGAGAACACTTTGCCACCATATATTTACCGCATGCGTCAGCTGGGATATCCCCCAGGCTGGCTGAAAGAGGCAGAGATGGAGAACTCTGGTCTGACTCTCTATGATGGGAAAgTGTCAAGTGATGGGGAAATTGAAGAGGATGAAAAGCACCAGGGCCAGCAAATCTCCTATGATGTGTCAAAACTAGTAGATTTCCCTGGCTTCAATGTCTGTGCGCCAAAACACATATCTGATgACTGGCGGTTGTATGGGTCTATTCCTATGCAGCACAGCAGTTTAAAAGCAAATTTTGCAGCCTATCTGTCACGTAATTTTCCTTCGcCAGGGTCTAACTCCAGCAAAAGACCACATGAATCTGAATCGACGCCTCGTAATCCCAAGAAAAGGAAATCTGATATCGTTGATCCTGCAAAGTGCCTGGACATGGATGTGGATTCAGGCTCTGAAACTCCCTGTCGCTCCAGGAGTTATGATAACTTCCAGTTCcagcctcctctccctcctggctCACCTGGCATGGGAACCCCACCGCCTCTGCCCCGTGGCACCCCCCCGGGCACTCCTCCGAACTTCATCCCCCCTCCGCCTGCCACCCCCACACCTCCACCACTGCCCAAGGGcactcccccacccacccccaccaaCAGGTCCCCGGCAGTGCGTGCGCGGGGCGGGGGTGATGACTCCACGGACGAGGATGCCCTGACTCTGGAGGAGCTGGAAGAGCAGCAAAGACTGATCTGGGCGGCACTGGAGAACACGGAGACCAACAGTGACTCGGAGACCCCTGTGGGCACCCCTGTGGGCACCCCTCTCGTGGGCACCCCTCTCCTTGGGACCTCAGGGGCATCCTCGCCCTGCAAGAATGACACTGAAACATTGCCAGAGGAGTCCGACGAGTTTGAGAAATTGGAGGCCGTCATCTCTGAACACAATAATGAAGACACCAGCAAGTCCGCACCAGCCGTGGAGACTGTGGAGAGCGTGGAGACTGTGGAGAGCGCAGAGACCATGGAGATGGTGGAGAGCGCCCAGAGCACCGTGGAGGAGAAGGCGGAAGTGATGGAAGTGACCAGCGAGGTTGAGGTCACCAAAGCGGAGGAAAATCCCCCGGCCGAACCAAGTGGCGGCACAACTGAAGATCCGGACGGCACCAGTGAGAAAGTTGAATCCGTCCCCCACCGGAGTAAATTCGCAGAAGGCATCATTCCCTTTGAAGACACAGCGGAATACACTAATGTCGCAGAAGCCACTGGAGTCTACTTCAAGATACGGGACTTGTTGAAGAGTTCGCCTCGCAACCAAACTAAAAAGAAACCGTGAGAGTTTCACCTGCAATGGAGAGGGCGTTGAAACTGTAACCATCCAGGGATTCGGTTTAAACCTTTCTATTCAATGGaccatttaatgtttttttcttctcatctgTGCTGCATAAAGATTggggttttaattatttaactactAGCAGCATGAGGAGAACCAAAATCAAGATTTCAACAGTCCAGAATGTTTCtccacagatgtttttttttttttcttaattttaatcatccatttctttttgtaaaaacaaatatataaatctttCTGCGTGTAAAAGGGTAGTTTGTAATGTAATGGTCACGTAAGaagtaggttttttttttaatgatatttttttctctagTGGTTGTCCTGTCACAGCAATCCCCTGTTCTGTGGCTatggtatttaatgttttaaatgttacaattttataattttattttcagtcttgcTTTCCAATCACTTACAAAACCTTTCAGGGATTTCAGGCATCCTGTTATtcaggtattttttaaatattctcagTAGTTGGTTTTTAATGCCCCATTTGACTTTGTAACCAACATTCAAAAGTACACATTCATCTTCCACTGTTAATaaacctttcttttttatatactgAACTACACCAAACATATGTAAAAGGCAAATCTGAATTTTAagttttccatttctgtcaATACCATGAAAAGCTAACATGGAtgcaatagaaaataataaaataagaaattttAATTGctctaaaa

Function

GO: NA

KEGG:

id description
K13128 ZCCHC8; zinc finger CCHC domain-containing protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148532 lncRNA downstream 86585 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 135433 20168118 ~ 20168331 (-) True G118518
TU148507 lncRNA downstream 150777 20152727 ~ 20152987 (-) True G118515
TU148494 lncRNA downstream 179276 20116451 ~ 20124488 (-) True G118502
TU148464 lncRNA downstream 222101 20081388 ~ 20081663 (-) True G118479
TU148709 lncRNA upstream 129242 20438959 ~ 20443273 (-) True AMCG00018788
TU148726 lncRNA upstream 173167 20482884 ~ 20485106 (-) True G118692
TU148731 lncRNA upstream 297111 20606828 ~ 20607086 (-) True G118696
TU148739 lncRNA upstream 335168 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 369563 20679280 ~ 20679555 (-) True G118715
AMCG00018780 mRNA downstream 24226 20229171 ~ 20279538 (-) True AMCG00018780
AMCG00018777 mRNA downstream 78707 20218377 ~ 20225057 (-) True AMCG00018777
AMCG00018771 mRNA downstream 209258 20087140 ~ 20094506 (-) True AMCG00018771
AMCG00018765 mRNA downstream 253521 20036729 ~ 20050243 (-) True AMCG00018765
AMCG00018766 mRNA downstream 271257 19991333 ~ 20032507 (-) True AMCG00018766
AMCG00018779 mRNA upstream 3468 20313185 ~ 20321631 (-) True AMCG00018779
AMCG00018776 mRNA upstream 39859 20349576 ~ 20362936 (-) True AMCG00018776
AMCG00018786 mRNA upstream 67308 20377025 ~ 20381267 (-) True AMCG00018786
AMCG00018788 mRNA upstream 132864 20442581 ~ 20458617 (-) False AMCG00018788
AMCG00018787 mRNA upstream 149238 20458955 ~ 20466043 (-) True AMCG00018787
TU148462 other downstream 223882 20078088 ~ 20079882 (-) True G118477
TU148412 other downstream 315596 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1256187 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1829519 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 2699916 17603356 ~ 17603848 (-) True G117899
TU148710 other upstream 134780 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 180494 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 293801 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 293801 20603518 ~ 20605820 (-) False AMCG00018794
TU148773 other upstream 387117 20696834 ~ 20697827 (-) False G118727

Expression Profile