RNA id: AMCG00018779


Basic Information

Item Value
RNA id AMCG00018779
length 2979
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00018779
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20313185 ~ 20321631 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTATAAATAGGTTCACACTGTGGGTTGCTATACAACTTGATGggctttagttttatttgtttgaggCTCACGTGTAGCATACGCTACCCAAGACAATTGATTGTTGACGTTGAAATAACAGTGCACTCGTGGACAAACACTGAGAAATAACTGTATAATCCGTGAATGCGATggattcatttttaatcaatttcaaaagGATTTTAAACTGCGCCCATCGCTCCGCTCTCGTTTACTGTATTGTCCCACAATGCATCGGGCCACAACATCCGGGACCCGTCCGCCAGGCTGCGGAGTTTCTGGATTCTGTTGTTCACGGAGAGAAGACAAGGTGGAGCGGAGCTGGGAGAGCgattaatacagtattttctgTGTCCGACAGAGCTATCATGGCGGCAAGTGACACTGATCAGGAAGGGGTTTCACTGAAGAAATCCCTCTCGGACACGGACAGGAAGAGGGAGGGCACAGATTCCTCCAAATCTCCAAGAAGTTCAAAACACCATCACTCCAGGTCTCGGTCACGATCAAGAGACCGAAAAAGAAAGTCAAGTGATAAGAAGCACAGACGATCCCGCAGCAGAAGCAAAGAgGCACGAAGAAAAGAGTCTGATGACAAATCTTCCAAATCACACAAGTCTGAAGAGCAGCACGATCGGGAACAGGCTGAGAAAGCGCGGGAAAGACTGAACTCTGAAAATGGAGAAGATCGTCACCGGCGTAAAGAGAAGAAGACATCAAGGGGCAGGAGTTACTCCAGATCAAGGTCAAGGGAAAGACGACATCGCAGCAGAAGCAGAGAGCGGAAAAAGTCCCGCTCCAGGAGCAGGGACAGGAGATCCAGAAGTCGAGACAGAAAGCGCCGTGCTAGGTCCCGCTCCAGGTCCAGGTCCAAGCACAGGCACCGAAGCAGAAGCCAGAGCAAGAGCAGGGAAAGGAAGAAACGAACTGAAAAGGTACGCAGATACAGTAGGAGCCGCAGTAGGTCTGTGAGTCCTCCGGCTTTCCGAGGCAGAAACACTGCAATGGATGCGCAGGAAGCGCTTGCCAGAAGGCTGGAAAGAGCAAAAAAATTACAAGagcagaaagaaaaggaaatgctagagaaacaaaagcagcaaGAGATTGTTGCAGCTGCAGCCACAGGTGGTTCTGTCCTTAATGTTGCAGCACTGCTTGCTTCTGGGACTCAGGTCACACCTCAGATCGCAATGGCTGCACAGATGGCCGCTTTGCAGGCCAAAACCCTGGCTGAGACTGGCATAGCAGTACCTAGCTACTACAACCCAGCTGCTGTGAACCCAATGAAATTTGCAGAAcaggagaagaaaaggaaaatgctttGGCAAGGCAAAAAAGAAGGGgactCAAAATCTCAGACCGCGGAACTGTGGGAAAAGCTTAACTTTGGAAATAAggaccaaaatgtaaaattccGAAAGCTGATGGGAATAAAAgGTGAGGATGAACCCGGTCCACCCACCATAACTGACGATGAAAGCTTGAAAACTCTGAAGCAGCAGGAGGAAGTGTTTCGAAATCTCGATGTTCAGTACGAAATGGCAcggtcacagacacacacacagagagggatggGACTTGGTTTCTCTTCTTCGATGAGAGGAATGGATGCAGTCTGACATCATTGTATTCAGCTTTTCTGCACAGCTTCTTGAGCACGCTGGAAACTTTAAAAGCTTTGTGTTCTGGTGTAAAAGTCCGTTTACTGAAAAAAGCTAGTAGACTAGCTTGCATGGATGTTGCATtggatatataatttattgacaaatctcacatttaaacattcatttgTAAATACAGTCTAGTTAAATGCTGACACCATCTCAGCAGTTGGGTTCTGtacatcttttaaaaaaatatgcaatggtttaaaaatgaagaGGGGATAGCAAAAGTTTGGGATAATTCCAATTGCTATAGCatctctttgcttttttttgtactaaaaatgtatatattttcatttgttgaaACATGAATGGAACATTGTGTAGATGTAAAGTAGAATGGTTCATTCATTATTAGCAGGTTGCCAAAGGGCACATTATCCAGGTTGGAGGCTTCTGGGTAATAACTTTCTTTTCATGTCTGATTAAAGTcaatacaataatgtttttatggAAAAGCACCACTCTTGATATCTTCATATGCAGTTTCTCCTACCTTCCTTGACCTATTAATTAGACAGTTTTTGTAAAATACTGATAGACTGCATTATAAGTGACCATTATAGCTTTACCTACCAAAAGGACAATAGAGGTTTTACAGTAGTAGATTTCATTAGATCATCAATACAAGCCTTTTATCTGCATTTTCACTGGCCAAATCTCAGCAGTAGTCTACAGCATGGTTTgccatttcttttttcagatgGCTTCTTTTGATAAATATCTGTACAGTACCTGTAGATGCTGTTGTAAGGTAATATACACCAATATTATTTCAGTAATATACTATGTGAATACTACTACGTCACAAAAAtgacttggggggggggggttggtgtAGTTGGCTTAATCATCTGTGGAATCGTTAAATGTGAATTCCAAAGGccataattaaaaccatttcacATTAGACAAGCTACAGATCTCTATATTAATTCCTAGTTTTAACAGTCTTtaggaatgtttttttccccttggttaatttaattccatttttttatatgtatgctACTTACAGGATGTTCAGAACATTTCAAACCAAAccctttctttaaaaagaaatagcCAAGCTGTCAGAACATATATAGTGTCTCCAACAGAGAGACATGATTGAATATTTATAAAGTACTGTTGCCCTTCATGAGTGGTGTTGAATGTAAACTTAGTCAAAACAGGATAATCCTGGTTGGACTAAGTATATTTGATCTTTCTTTTGAAAGAGAAACCATCTCTAAACTATTACATTGcctgtaacattttaaacaagcaGCCAATAAATGGTGCATAGGA

Function

GO: NA

KEGG:

id description
K24595 RSRC2; arginine/serine-rich coiled-coil protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148532 lncRNA downstream 96006 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 144854 20168118 ~ 20168331 (-) True G118518
TU148507 lncRNA downstream 160198 20152727 ~ 20152987 (-) True G118515
TU148494 lncRNA downstream 188697 20116451 ~ 20124488 (-) True G118502
TU148464 lncRNA downstream 231522 20081388 ~ 20081663 (-) True G118479
TU148709 lncRNA upstream 117328 20438959 ~ 20443273 (-) True AMCG00018788
TU148726 lncRNA upstream 161253 20482884 ~ 20485106 (-) True G118692
TU148731 lncRNA upstream 285197 20606828 ~ 20607086 (-) True G118696
TU148739 lncRNA upstream 323254 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 357649 20679280 ~ 20679555 (-) True G118715
AMCG00018778 mRNA downstream 3468 20303764 ~ 20309717 (-) True AMCG00018778
AMCG00018780 mRNA downstream 33647 20229171 ~ 20279538 (-) True AMCG00018780
AMCG00018777 mRNA downstream 88128 20218377 ~ 20225057 (-) True AMCG00018777
AMCG00018771 mRNA downstream 218679 20087140 ~ 20094506 (-) True AMCG00018771
AMCG00018765 mRNA downstream 262942 20036729 ~ 20050243 (-) True AMCG00018765
AMCG00018776 mRNA upstream 27945 20349576 ~ 20362936 (-) True AMCG00018776
AMCG00018786 mRNA upstream 55394 20377025 ~ 20381267 (-) True AMCG00018786
AMCG00018788 mRNA upstream 120950 20442581 ~ 20458617 (-) False AMCG00018788
AMCG00018787 mRNA upstream 137324 20458955 ~ 20466043 (-) True AMCG00018787
AMCG00018785 mRNA upstream 149908 20471539 ~ 20476529 (-) True AMCG00018785
TU148462 other downstream 233303 20078088 ~ 20079882 (-) True G118477
TU148412 other downstream 325017 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1265608 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1838940 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 2709337 17603356 ~ 17603848 (-) True G117899
TU148710 other upstream 122866 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 168580 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 281887 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 281887 20603518 ~ 20605820 (-) False AMCG00018794
TU148773 other upstream 375203 20696834 ~ 20697827 (-) False G118727

Expression Profile