RNA id: AMCG00018781


Basic Information

Item Value
RNA id AMCG00018781
length 252
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00018781
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20372219 ~ 20374812 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGAGGTCAGAttaaacagaagaagaagacgGTTCCCCAGAAAGTAACCATAGCCAAAATCCCCAGGGCTAAGAAGAAATACGTCACTAGGGTCTGTGGTCTTGCAACCTTTGATATTGACCTTAAAGAAGCACAGAGATTTTTTGCCCAGAAATTCTCTTGTGGAGCCTCTGTTACAGCGGAGGATGAAATCATCATTCAGGGAGATTTTACAGACGACATCATCGATGTGATTCAAGATAAGTGGCCT

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148577 lncRNA upstream 71079 20302670 ~ 20302958 (+) True G118572
TU148570 lncRNA upstream 74207 20279288 ~ 20299830 (+) True G118566
TU148377 lncRNA upstream 379708 19994126 ~ 19994329 (+) True G118410
TU148240 lncRNA upstream 795006 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 894081 19479691 ~ 19479956 (+) True G118291
TU148616 lncRNA downstream 2541 20377288 ~ 20381442 (+) True G118601
TU148629 lncRNA downstream 64213 20438960 ~ 20443229 (+) True G118608
TU148639 lncRNA downstream 116114 20490861 ~ 20491106 (+) True G118618
TU148641 lncRNA downstream 124927 20499674 ~ 20500210 (+) True G118620
TU148642 lncRNA downstream 126203 20500950 ~ 20501433 (+) True G118621
AMCG00018775 mRNA upstream 25095 20322418 ~ 20348942 (+) True AMCG00018775
AMCG00018774 mRNA upstream 61481 20311158 ~ 20312556 (+) True AMCG00018774
AMCG00018772 mRNA upstream 166583 20202428 ~ 20207454 (+) True AMCG00018772
AMCG00018773 mRNA upstream 176933 20189590 ~ 20197104 (+) True AMCG00018773
AMCG00018770 mRNA upstream 222311 20121209 ~ 20151726 (+) True AMCG00018770
AMCG00018784 mRNA downstream 8382 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018783 mRNA downstream 33326 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018789 mRNA downstream 83218 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018782 mRNA downstream 102379 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018792 mRNA downstream 227264 20602011 ~ 20603279 (+) False AMCG00018792
TU148559 other upstream 113097 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 399307 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 923409 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1652694 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 2391734 17981210 ~ 17982303 (+) False AMCG00018681
TU148644 other downstream 139413 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 217989 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 218619 20593366 ~ 20594139 (+) True G118636
TU148663 other downstream 227209 20601956 ~ 20603315 (+) True AMCG00018792
TU148789 other downstream 380882 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile