RNA id: AMCG00018782


Basic Information

Item Value
RNA id AMCG00018782
length 2667
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00018782
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20477126 ~ 20484929 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggaatCTAAGACGTGTCCCACGAGAGATGCATTTTACTCTTGCGCCTGCTTTTACACGGACAATATTTTTCTTGAAGAATACAAACTGCATATCCGATTTCTCTCTGAGCAGCAGTTTAGACAGGATTACCAACTGGTGCTGAGAAATCGTGGATGCACTACTAACAAGCAGTTCGAGGAAATCCTGCACAAGATTGGCTCAGAGATTCAGATTCGGCGACAGCTGGACGTGAACTCTGCACAGAGAAAGGCTCTTATATGTGAAGTTTACAAGCCATTGCACAGACATCTGTACTCCTTACAGGAATCGTACCTGGCCCCTGAATTTCTCGAAATGGTACGCTATTCACATTCAAAAGATGCCAGTGCAGAAGGCCTGCTCAATTTCATGCAACCAGTGGCAgGAGCACAAAAAGTATATCGCTTCCCGGTGTTCACCAGTGAATTCTGCACAGAGCTGATTGCAGAACTGGAGTATTTTGAGCAGTCTGACGCACCCAAAGGCAGGCCTAACACCATGAATAACTACGGAATTTTACTGAATGAGCTTGGATTCGATGAAGGCTTCATCACCCCTCTGAGAGTGGACTACCTCAGTCCCATTACAGCGCTCCTGTACCCAGAGTGTGGAGGGGACTGCTTGGACAGCCATAAAGCATTTGTGGTGAAGTACGCCATGCATGAGGACCTGGACCTCAGCTATCACTATGACAATGCAGAGGTCACACTCAACGTGTCTCTGGGGGAGGATTTTGTGGAGGGAAACTTGTACTTCGGAGACATGAGACAGGTGCCCCTCAGCGAGTCGCAGTGCGCGGAGGTGGAGCACCGTGTGGCGGAGGGCCTCCTGCACCGGGGCCAGCAGATGCACGGCGCCCTGCCCATCACCGCCGGCCGGCGCTGGAACCTCGTCGTGTGGATGAGATCCTCCCGGGAGCGGAGGCTGCGCTGCCCCATGTGCAACAAGACACCGGACCTGGTGCCAGCAGAGGGATTTGGCGACGGGTTCACACAGGGCTCCCAGTCCCCATCTGCCCCAAATACACCATGTGTGATGGAGCGCGGCCGGTCCAGGGACACGTCTGCAGGGCGGAGCGAGAGCAGGCACACGCAGGAGAAAAAGGAGGGAAAGAAGAAGCGACGGAGgagctcctcttcctcctcttcctcctcctcctctaggAGCAGCGTGAGCCCCTCCTCCAAACCAAGACAAGACCCTTCCAGCAAGAGCCAAGTGATGACCGATGAGCAGAAGGCCCGGATCTCTACCAAGAGGCCCATGACCAAGGAGGAGTGGGACGCCAAGCAGAGTGTGATCCGCAGGGTTGTCGACCCTGAGACAGGCAGGACCAGGCTCGtgaggggagaaggagagataCTGGAGGAAATTGTGAgcagagacaaacacagagagatcAACAAGCAAGCAACCATAGGCGACGGACACGCCTTCCAGAAGAGATCAGGGCTCAAGCGCTAATGTAGCAATAATGGACATTCACCATCTCCACCCATCTCTGGCCTTGAAGGAGATGAACATCCTGCTCCCAGCCCCTCCGATCTTCCCCGGCCCGGGTCTCGTCTCTTGGATTCACCGTCAGGATCCCACATTAGTGGCCTCCCAATTTCAAACCTTACGTGCAAACCACACAGTGTGGAGTGTGAAGCAGGAAAACCTTCACAGGCTCTGGAGTCGCTGTTAGttatatttccattttcatcTCCCAACCCTGGTCTGATAGCTGGAGGGTCCTACTTCAACCAAAAATCCCACAGCACCTGCTGAGCCAATAACTCTTAATCTCCCGATTTAGTACAGATGAAGAATCTATTAACTGGCAGACAGGAATCTTTATTAGTAATTTACAAGAAGCAGTGGAAGAATGCAGAAAAAATTCTCCGTCATGTGggagtgattttttttgttttgttctcccgttcttaatatttatttatacactgtACATAAAACACAGGGAAAGAATAAAACAGCGGTCCAATTGTCTTTTAATCCACATTACGTACAATGATACTGTACACAAAGCACACCCAGGCATCAGAACATTGCACTAACAGCCAGGAAAGAAGAAATATGCAGGTGTGAGTGTTACACACGATTTGAACAGGTCGAAAACATTAGCTTTACAcacttgaaataaatacaggaaatcAAAACTGTTAAGCAGCAGATTGAATTTGGAAACAACAGATTTCGTTAGTTGATGTTATAATTGGTGTGCCTAggaaaggatgtttttttttttccacttattactattttcatttttatattcatcTATGTCCATATGTAACGTTTccctataaataaaatataacaaacatacaaaagttTGTCAAATTCATCAATATTTTCATGGATGTAAAACAACAGAAGGAAATGTAAGGCTTCTGTAACTAAGATTTACAGCAGCAAAGCTGAAGAACCTGATCTAGAAGAGCTACTGCGAATGAACGAGTCTGAAAATGTACTGCTCTGGAACCCCCCTGCTTACAAGTACTGCGTAATGATCCCAACGGACACTTGATTTCTACTGATATTAGCACGTCAAATATAAAGAGAATTGTTCTACATCTGGTCACGTGTAGCAAACTTCAGCTGAAATAGTCACTGAGGGAAGAAATAGTCTCCCGTTGATAATTT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148629 lncRNA upstream 33897 20438960 ~ 20443229 (+) True G118608
TU148616 lncRNA upstream 95684 20377288 ~ 20381442 (+) True G118601
TU148612 lncRNA upstream 102314 20372219 ~ 20374812 (+) True AMCG00018781
TU148577 lncRNA upstream 174168 20302670 ~ 20302958 (+) True G118572
TU148570 lncRNA upstream 177296 20279288 ~ 20299830 (+) True G118566
TU148639 lncRNA downstream 5932 20490861 ~ 20491106 (+) True G118618
TU148641 lncRNA downstream 14745 20499674 ~ 20500210 (+) True G118620
TU148642 lncRNA downstream 16021 20500950 ~ 20501433 (+) True G118621
TU148643 lncRNA downstream 19187 20504116 ~ 20504507 (+) True G118622
TU148645 lncRNA downstream 32330 20517259 ~ 20517494 (+) True G118624
AMCG00018789 mRNA upstream 13777 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018783 mRNA upstream 43471 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018784 mRNA upstream 78789 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018781 mRNA upstream 102379 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018775 mRNA upstream 128184 20322418 ~ 20348942 (+) True AMCG00018775
AMCG00018792 mRNA downstream 117082 20602011 ~ 20603279 (+) False AMCG00018792
AMCG00018793 mRNA downstream 146074 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018791 mRNA downstream 157400 20642329 ~ 20645241 (+) True AMCG00018791
AMCG00018799 mRNA downstream 185907 20670836 ~ 20678821 (+) True AMCG00018799
AMCG00018800 mRNA downstream 194351 20679280 ~ 20695194 (+) True AMCG00018800
TU148611 other upstream 102314 20373996 ~ 20374812 (+) False AMCG00018781
TU148559 other upstream 216186 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 502396 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 1026498 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1755783 18719206 ~ 18721343 (+) True AMCG00018702
TU148644 other downstream 29231 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 107807 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 108437 20593366 ~ 20594139 (+) True G118636
TU148663 other downstream 117027 20601956 ~ 20603315 (+) True AMCG00018792
TU148789 other downstream 270700 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058916 True 446 processed_transcript 0.36 2 NC_007116.7 28041984 ~ 28042519 (+)