RNA id: AMCG00018783


Basic Information

Item Value
RNA id AMCG00018783
length 3060
RNA type mRNA
GC content 0.58
exon number 30
gene id AMCG00018783
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20408073 ~ 20433655 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGAAGCTGAAGGTGCAGGATGCTTTGTTGAAGAACAAGGACGAAAAGTTGGCCAGCATCAGCAAAGCCATCAACAGCACTGAGACCCCAGTAAAGGAGAAGCATGCACGCAGAGCCTTCACGTTCTGGTCGTACGCGCTGGGCCTGCCCCTGGCCAGCAACTCCATCCTCAGCTGGAAGTTCTGCCATGTCCTGCACAAAGTCCTGCGAGATGGGCATACCAATAGCCTGCAGGACTGCGCGAGGCATCGGAGCAACATTCGGGAGACGGGGGTTCTGTGGggTAACTTGCATGATCTATATGGACAGCTTGTTGCACTTCACTGCAAGCTCCTGTGCACGAAGATGGATTTCCACATGAAGtATCCAGATATCCGCCCAAACCTTGAGGCATCGGATGAAGTCCTGGAGCGAACAGCCGGCACTAACATCGACAACGTTTTCCAGCTGACAGTGGAGGTGTTTGACTATCTTGACTGTGAGCTGAAGTTGGCAGAGACAGTCTTCCGGCAGCTCAACACCTCCATCGCCATCTCCACGACCACGTTGGGGCAATGCAGGCTGTCCCCACTGATCCAGGTGATCCAGGACTCCAGTCAACTGTACCACTTCACTGTCAAGCTGCTCTTCAAACTGCATGCCTGTTTGCCAGCAGACACTCTTCAAGGGCACAGAGACCGATTCCATGACCAGTTCCACAGGCTGAAAAACTTCTTCAATCGGGCCAGAGACATGCTGTACTTCAAGAGACTCATCCAGATCCCCAAGCTCCCTGATTCCCCCCCTAATTTCCTGCGTGCATCTGCACTGGCAGAGCACGTGAAGCCCGTGGTGGTGATACCAGATGAGGAGCCATACGACGACGACCCCGAACCTCTGATTGAGGTCAGTGTGACGCCCCAGTATGAGCAGCAGATGCACCTACAGGCCCAGCCACAGgcGCTGGACATATTTGATAAGACCTTCGGGCCTCCTAATGGTGGCTTTGATGAGAGGGATGTTCAGATAGACAACCTCAAGCGGGAGATTGAGATGCTCAGAGCCGAACTGGAGAAGATCAAAGCTGAGGCCCAGCGCTACATCACCCAGCTGAAGTCGCAGATCAACAGCCTGGAGGCGGAGCTGGAGGAGCAGCGGATACAGAAGCAGCGTGCCCTGGTGGAGAATGAGCAGCTGCGCAtggagctggagcagctgcGGCAGCAGGGCGTGGAGACAGAGAGCGTGCAGGCCAACTTCGTGGAGGCTGAGAAGCGAGCCCTGGCCACAGAGCTGCGCTACACCAAGCTGAAGGAGAAGCACGCCGAGCTGGTCAGCAGCCATGCGGAGCTCCTCAGGAAGagtGCGGACACTGTGAAGATGCTGTCGGCCACACAGCAGACCCAGGAGGAGGTGGCCAGGACCAAACAGCAGCTGGCCTTCGAGGTCGACCGGATCAAACAGGAGGCTGACATGAAGCTGGAAGAACAGAAATTTGAAATGGAGAAGCTGAAACGGGAACTGGAGGAGAGGAGAACGGAGCTGTTGCGAGTCCAAACAGCCCTGCAGGGGCATCTGAAGTCGGGCGAGCAGCTCAACAGCAGCCTGGTGGGGCTACAGGCTGAGAAGGAGGTGCTGTCCCAGAAGGTGAGCGAGCGTGAGGCGGAACTCATCACCCTGAAGAACAGCATGACAGCGCAGGAGGCCTCCCTCCAGCAGCAGAGGGACAGGACAACCCGTGAACTGGGGGAGCTGCAGGGCAAACTGAAGGAGAAGATGAGCAGAgaggagcagctgcagcagaAACTCCTGGAGGAGCAGTTCAGCCTGCTGCAGGGCACGGTGAACGAGGCCGAGAACATCATCCAGGATGCCGTGGCCAAGCTGGATGACCCCCTGCACATACGCTGTACCAGCTCCCCAGACTACCTCATCAGCCGTGCAGAAGCCGCCCTGACCTCTGTTGACGGTGTGAAGAAGGGCCATGCTGACTACCTGAGGAACATGGGAGATGCAGGCAGCCTGCTCAGGGCCCTTGCCCAGTTCTCCCACCTGACGGCCGACACCATCGTGAATGGCAGCGCCACAGCCCACATGGCCCCCACTGACCACGCCGACAGGCTGACGGATAACTGCCGCAGCTGTGGGACTCGGAGCCTGCAGTTCCTCAGGGACCTGAAGTCCAAGCAGTCCCTGTCCCAGGCCGACCCCGCCGCCGTCAAGCTCATCATCCAGCAGATCTTGCGCTTGGGCCAGGAACTGAGGCCGAAGGGTATGGACGTCAGGCAGGACGAGCTGGGAGATCTGGTGGACAAGGAGATGGCTGCTACTGCCGCCGCCATTGAGGAGGCAGTGAGGCGGATTGATGAAATGATGAACCAGGCGAGGAAGGACACCACTGGGGTCAAGCTGGAGGTCAACGAGAGAATCCTCTACTCCTGTACAGACCTGATGAAGgGGGCCGCCACAATACGGGAGTTCTACGCCAAGAATTCTCGCTGGACTGAAGGCCTGATTTCTGCGTCTAAAGCCGTGGGCTGGGGGGCCACTCAGATGGTGGAGTCTGCCGACAAGGTGGTCCTGCACACAGGGAAGTATGAGGAGCTGATAGTGTGCTCCCATGAGATCGCTGCCAGCACCGCACAGTTGGTCGCTGCGTCCAAGGTGAAGGCTGACCGCAACAGCAGGAAGCTGACCACCCTGCAGCAAGCCTCTCGCTATGTCAATGAAATGGCAGCCAACGTGGTTGCCTCCACCAAGACTGGGCTGGACCAGATAGAGGACAAGGACACCATGGATTTCTCCGGCATGTCTCTCATTAAACtgaagagagaggagatggaGTCCCAGgtgaAGGTGCTCGAGCTGGAAGCCCAGCTGGGCAATGAGCGGATACGCCTGGGGGAGCTGCGGAAGAAGCACTATGACCTGGCCGGGGTGCCCCTGGAGGAGCTCAGCGATGACGCCGGTTTCCTGAAGTCCGAGCCCCTGTCTCCCACCCCAGGAAAACCCACCATCATGAAGAAGCCCCCGCTGGCACAGAAACCCACCATCAAGCGGAATAGCAGCCCGGTATGA

Function

GO: NA

KEGG:

id description
K20040 HIP1R, SLA2; huntingtin-interacting protein 1-related protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148616 lncRNA upstream 26631 20377288 ~ 20381442 (+) True G118601
TU148612 lncRNA upstream 33261 20372219 ~ 20374812 (+) True AMCG00018781
TU148577 lncRNA upstream 105115 20302670 ~ 20302958 (+) True G118572
TU148570 lncRNA upstream 108243 20279288 ~ 20299830 (+) True G118566
TU148377 lncRNA upstream 413744 19994126 ~ 19994329 (+) True G118410
TU148629 lncRNA downstream 5305 20438960 ~ 20443229 (+) True G118608
TU148639 lncRNA downstream 57206 20490861 ~ 20491106 (+) True G118618
TU148641 lncRNA downstream 66019 20499674 ~ 20500210 (+) True G118620
TU148642 lncRNA downstream 67295 20500950 ~ 20501433 (+) True G118621
TU148643 lncRNA downstream 70461 20504116 ~ 20504507 (+) True G118622
AMCG00018784 mRNA upstream 9736 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018781 mRNA upstream 33326 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018775 mRNA upstream 59131 20322418 ~ 20348942 (+) True AMCG00018775
AMCG00018774 mRNA upstream 95517 20311158 ~ 20312556 (+) True AMCG00018774
AMCG00018772 mRNA upstream 200619 20202428 ~ 20207454 (+) True AMCG00018772
AMCG00018789 mRNA downstream 24310 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018782 mRNA downstream 43471 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018792 mRNA downstream 168356 20602011 ~ 20603279 (+) False AMCG00018792
AMCG00018793 mRNA downstream 197348 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018791 mRNA downstream 208674 20642329 ~ 20645241 (+) True AMCG00018791
TU148611 other upstream 33261 20373996 ~ 20374812 (+) False AMCG00018781
TU148559 other upstream 147133 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 433343 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 957445 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1686730 18719206 ~ 18721343 (+) True AMCG00018702
TU148644 other downstream 80505 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 159081 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 159711 20593366 ~ 20594139 (+) True G118636
TU148663 other downstream 168301 20601956 ~ 20603315 (+) True AMCG00018792
TU148789 other downstream 321974 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00061239 False 3482 mRNA 0.49 32 NC_007116.7 66366865 ~ 66429357 (-)