RNA id: AMCG00018784


Basic Information

Item Value
RNA id AMCG00018784
length 1752
RNA type mRNA
GC content 0.53
exon number 15
gene id AMCG00018784
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20383129 ~ 20398337 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCCCTTCTGTGATCTGTGGATTTCTTTACAATGTATTGTCTAAATTTTTATagagtttaaaaaagaaacagtaaatcaataaatccgAATTAAATAATAGAAAGAATAATCAAGGCATAACTGGAACTCGACACGTAGGCCTTAGCATGTTTTTATTGGAGGTATTGCTATGGATCCCTGGCACAGCACTCCCATAAAACAACACAGTTTTAGCTTGGCAAAGAATTCATCCTCTCCTACACAGCTTCATTTTGGCAACGGAGCGAAAACACAGACATTATCCCCCTTGCAGGTCTCTGATGATCGGCCAGCTTCTGTTGCTGAGAGGAAGCATGTGCAGAAGACAGCGGGTGAGATTGAAGGTGCCACCATCCAGAAACAGCGTAAGGAGCTGCAACTTCTGGTTGTAGAGCTGAAGGACCGTGACCGGGAACTGAATGACATGGTGTCGGCCCACCAGAAACAGCTGCTggcctgggaggaggaccggcAGAGAGTGCTCACGCTGGAGCAGAGATGTGCACGGTTAGAGAGCGAGCTTCAGAAAAGGAATGACATCATCCGGTCCCTGACAAAGAGAATCAAAATATTGGAGGCCCAGCATCAGGACCGCCAGTCTGCTCTGACCAGCACACAGCAGCGGCTGCAGGACGTCAGTCAGCGAGAGCAGCTGACCTCTACCCAGTGCCAGGACCTGCAGGAAAGAAACCAAAGTCTTAATTCCTCCATGTTAGAGCTGTCGTCTCAAGTTGGGCAGCTCCAGGCACGTGAGCAGGAACTCGGTGCCATGCTTAAATTAAAGGACAAGGACATGACAGAAGCCACCAACCACATCATAGACCTGTCGGGTCGCTTCAGGAAGCTGGAGGCTGCGGTGAAGGAGTGTCGAGTGAGGGAGGCCCGGGCCATGAGGGAAGCGCAGGAGTACAGAAAGCGACTGCGGGAGGCTCGACACGAGGCGGACAGGCTCACAGGTGATTTACGGGAAAAGACTGCGGAGAACAATAGCCAAAAGGAAGATCTAATCCGACTCAAACAGGAAAATCAGCTTTTGCAAAATGAGCTTGCTCTGGCAGGTGAAGGTGAGCGCAGGAAGGAGGACCTGCTGGAGCTGGCCAGATCGAAACAGGAGCGCACCGAGACCGAGCTGCACTGCCTCCGACAGGTGTGTGAAAACCAGCAGAATGATCTACAGCTTCTTCATCTGAACCTGGAGAGCTCGCAGGAGAGactgcaggagagggagaggaggggctctggaggaagCCAGGGAAGATTGGACTTCAGCTCCCTTCGTCTGGCCTCTCCGGTGCTGCCGGTGGGTTCCTCCTCAGGCACAGATCAGTGGAAGCAGCGAGGGAGCCCGCGTCCAGGAAATGGCTGTCGGGAACTGGGAGTTTCACCCCCCCGTGTCACTGTAAATGGAGACCCCACACCCATCTCTAATCCTGCTGACAGTATGATAGGATCGGCCCCTCGGGGATGTGAAATGAAAGCTGTTGCTGGCTTTCCTCCTGAGGGTGAGCCGCTGTCCCCCACGACCCGCCTGCAGCGCCTGCTAGCCGAGTCCAGGCAGATGGTGATGAGTCTGGAGCACACCACTCTGCGGCCGCCCAGTCCAGCACGCAGCCTTGACAGCAGTGACAGCGGCAGGAGCATTGAAGCTTTAGACACCAAAGAACAGCTCCtgtcagaaaacacaaaagccCATCCAATGAAGAGCTCTGTGCCATCCAAGAGTCTTGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148616 lncRNA upstream 1687 20377288 ~ 20381442 (+) True G118601
TU148612 lncRNA upstream 8317 20372219 ~ 20374812 (+) True AMCG00018781
TU148577 lncRNA upstream 80171 20302670 ~ 20302958 (+) True G118572
TU148570 lncRNA upstream 83299 20279288 ~ 20299830 (+) True G118566
TU148377 lncRNA upstream 388800 19994126 ~ 19994329 (+) True G118410
TU148629 lncRNA downstream 40623 20438960 ~ 20443229 (+) True G118608
TU148639 lncRNA downstream 92524 20490861 ~ 20491106 (+) True G118618
TU148641 lncRNA downstream 101337 20499674 ~ 20500210 (+) True G118620
TU148642 lncRNA downstream 102613 20500950 ~ 20501433 (+) True G118621
TU148643 lncRNA downstream 105779 20504116 ~ 20504507 (+) True G118622
AMCG00018781 mRNA upstream 8382 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018775 mRNA upstream 34187 20322418 ~ 20348942 (+) True AMCG00018775
AMCG00018774 mRNA upstream 70573 20311158 ~ 20312556 (+) True AMCG00018774
AMCG00018772 mRNA upstream 175675 20202428 ~ 20207454 (+) True AMCG00018772
AMCG00018773 mRNA upstream 186025 20189590 ~ 20197104 (+) True AMCG00018773
AMCG00018783 mRNA downstream 9736 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018789 mRNA downstream 59628 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018782 mRNA downstream 78789 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018792 mRNA downstream 203674 20602011 ~ 20603279 (+) False AMCG00018792
AMCG00018793 mRNA downstream 232666 20631003 ~ 20637704 (+) True AMCG00018793
TU148611 other upstream 8317 20373996 ~ 20374812 (+) False AMCG00018781
TU148559 other upstream 122189 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 408399 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 932501 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1661786 18719206 ~ 18721343 (+) True AMCG00018702
TU148644 other downstream 115823 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 194399 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 195029 20593366 ~ 20594139 (+) True G118636
TU148663 other downstream 203619 20601956 ~ 20603315 (+) True AMCG00018792
TU148789 other downstream 357292 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile