RNA id: AMCG00018785


Basic Information

Item Value
RNA id AMCG00018785
length 2503
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00018785
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20471539 ~ 20476529 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGTCTTCCGCCTTCCACTAGCAACAAGAAGACGCTGAGCTCGCCGCGCCAATTCCGTTGATGCACAAGACACACGCAAGATCAGACACCGTCACCCCCGATAGCCCCATTCCTGAGAAGGGGACCATACCCTGTGCACAGATTTCTTATCGTTTGCGTTTCGGTGCGGCGGCACCTGGAGACGGTCCAGATGTTGAGTATGGACTCGCTGCAAGTGGCAGAGGAGGAGGTAGTTGAATCCACGTCCAACAGATTGGAAGATATCCACACCTTTCTGGCCGAGGGCTGCTACCCTCAGACCATGAGTCCCATTCGCAAGAAAAACCTGAAACGATACGCGCAGAAATTCATTATTGAAGAGGGTCGGTTGTATTATGTGGGccagaaaaaagaagaaaagcgGGAAGTCGTGATAGATGCGGAGAGGAAACGCCAGGTTTTCCTCGAATGCCATTTCAATGACATCGGCCATCATCTGGGGCAAAAGAAAACGGTTCACAGGATCCAGAGCAAATATTACTGGCTGGGGATCGTGAAGGATGTGGTTGACTGGATTAAAGTCTGTGAAACTTGCCAACATGCAGAGCGCAATAAAAACATGTCCAGGAAAGTGCGGCCTATCAAGGTTGAAGCTCCATGGGAGATCCTGGGCATTGATATTTTCGGTCCTTTTCTAGAGTCAAGGAGAGATAACACCTACGTTGTCATAATAACCGATTATTTAAGCAAGTGGGTGGAAGCTCATCCAATCCAGAAGAAGGACTCTCTGTCAGTAGCCAGATGCATTTCTTCAACCTTTTACAGGTTTGGAGCGGCAAAAACAGTATTCTGCTGTCAAAGCCCGGATTTCTGTGAAGAGGTGACAAAGCAGCTGTGTGACCGGTGGAACATCGTCCAGAAGATCTCTGCGGTGGACCAGCCCCAGCTCAGCGCTCTGTACGACCGCAGCAGTGACCTGCTGAAAGAAGCCATCAGGCAGGTGGTGACGGAGAAACAGATGGACTGGGACGACTACCTGGACCCCGTGCTGTTTGTGTTCCGAAACTCCGTCAACCCCACCACCAAATTCACTCCTTTTTACGTGATGTTCAACAGGGAGGCCAGCTTGCCCAATGAGATTGAATTTGACCTCCTCAAGGACCACCAGGGACAAGAGGTAATAGCCAACATGAATGCAGCTTACAAACAGGAAAAGAAGAATGCCAAACGGAGAGCACGGACCATGCCCTCTATAACATTTAAGGTGACGGATCCTTTATTTGGCCCAGGAGACTCGACTCAACTAAAGAAGCTCAAAGAGAGCCACTACTTGTCTTTTCCTGTTGAAACGGTGCTGACGTCAGACCAGAGTGAGTCTGAGGGGAAGAAAAGTGACTTAGAATATACTTCATCAGTCCCTCAGGTTCATTAAGGGTATAGCGAAGGTCACCCTGAAGTCCTGAAGATGGATTGGCGTATTTTGACTACAGAGAGTTCCCGTAGGTGCTGCTTGGTGCTGATGTACAAGAAGCAACCCTCATCTTGATATGCGTTTCACTTCTTTGCACGTCTGACGAAGTATGCGCTGCACTGGTTCCGATATATTGACAAGCATCCGTGTCATTCTGCACTCCACACAGATGAAGGTCAATGGAAAACTTCCAGGCGTAGCATGGTCCTCCTGGTTGAAACTGATATCCATACAGGATGTTTACAAGTAAATTATAGTTCAGTTGACAACCACAGTTGACTGTGCGCCAAAGCAAAGGGTGACTGAAACATTCTTGAGCTAATTGCACATGTAGgttctgttgttttgttattttctctttaatgaTTTATATGGAAATGGTACCCCCAAAAACATCAGTGGGTGACTTCAGTAGCAAGCAATTACAAAGCCCCAGTAAAGCCCCAGCTTCTGGAGATGTTCAGGAAACCAGGGTACGAATTGGCGAGAAGAAATGTTGCAATTCTTCATTCCTAGATCTTCATGTCACTTTTTGGTGTGTTAGGTACTGTGAGTGGAGTTCATCTGAGACTGTGCTGTTCCTTACAAGCTTGAATCACTAGTTGAAGAAAATGAGGCATGCTTTTGACTAACGGGTCTTAATATTGATGGCATCCATGCGGTGTTTACTTACTGatttaagttgtttttaaagatcaTATTGTTGTATAAGCTTCATGCTTGAATTTATTGAATGACTTTAACTTCAGAGATGCTCAGTTCTTAAGATGTAGTTTTGAAAACTATAATTTTCCTGAAGATGATGTTattgaaattgtgattttacaTGGGGCCTCAACTCCATGTAATTTTTGATCAACCTTTgagtttaattatatatatatttttttagccCTGGCAACTAGCTACATTcctttttgtggttttatgtaTACAGAAAATGGTACAACGATGGGTTAGttgctggggagggggggattgcattatacatattttttgccCTCGTAGGGAAGTGGTTGgttgatttgaaataaataatttaatttttttaaa

Function

GO:

id name namespace
GO:0015074 DNA integration biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148709 lncRNA downstream 28266 20438959 ~ 20443273 (-) True AMCG00018788
TU148532 lncRNA downstream 254360 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 303208 20168118 ~ 20168331 (-) True G118518
TU148507 lncRNA downstream 318552 20152727 ~ 20152987 (-) True G118515
TU148494 lncRNA downstream 347051 20116451 ~ 20124488 (-) True G118502
TU148726 lncRNA upstream 6355 20482884 ~ 20485106 (-) True G118692
TU148731 lncRNA upstream 130299 20606828 ~ 20607086 (-) True G118696
TU148739 lncRNA upstream 168356 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 202751 20679280 ~ 20679555 (-) True G118715
TU148759 lncRNA upstream 204081 20680610 ~ 20681038 (-) True G118716
AMCG00018787 mRNA downstream 5496 20458955 ~ 20466043 (-) True AMCG00018787
AMCG00018788 mRNA downstream 12922 20442581 ~ 20458617 (-) False AMCG00018788
AMCG00018786 mRNA downstream 90272 20377025 ~ 20381267 (-) True AMCG00018786
AMCG00018776 mRNA downstream 108603 20349576 ~ 20362936 (-) True AMCG00018776
AMCG00018779 mRNA downstream 149908 20313185 ~ 20321631 (-) True AMCG00018779
AMCG00018790 mRNA upstream 12406 20488935 ~ 20523819 (-) True AMCG00018790
AMCG00018795 mRNA upstream 111060 20587589 ~ 20601750 (-) True AMCG00018795
AMCG00018794 mRNA upstream 126966 20603495 ~ 20606743 (-) True AMCG00018794
AMCG00018796 mRNA upstream 132366 20608895 ~ 20624686 (-) True AMCG00018796
AMCG00018798 mRNA upstream 161181 20637710 ~ 20641876 (-) True AMCG00018798
TU148710 other downstream 14016 20444497 ~ 20457523 (-) False AMCG00018788
TU148462 other downstream 391657 20078088 ~ 20079882 (-) True G118477
TU148412 other downstream 483371 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1423962 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1997294 18466368 ~ 18474245 (-) True G118075
TU148728 other upstream 13682 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 126989 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 126989 20603518 ~ 20605820 (-) False AMCG00018794
TU148773 other upstream 220305 20696834 ~ 20697827 (-) False G118727
TU149076 other upstream 1603935 22080464 ~ 22113695 (-) True G118936

Expression Profile