RNA id: AMCG00018786


Basic Information

Item Value
RNA id AMCG00018786
length 369
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00018786
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20377025 ~ 20381267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTACTACTGAAAATGCAGAATCAGGTTCACCAGAGAACAAAGTGGATCGCAGGCATGCTGACTCCAACGCTAAATACCCTTTGAAAGTGCTCTACTGTGGAGtttgttCCTTGCCAACAGAGTACTGTGAATATATGCCTGAACCAGCGAAATGCAGGCAGTGGTTGGAGAAAAACTTCCCAGATGAGTTTGCCAAACTCAGTGTAGGAAACTCTCCTAAGCAGGACAGTGGTGGTGGAGAGGTCCCTGCtctgggggaggaggaggagaagaagaagcagaagagaGGTGAGAGGTTAGGGGTTAAGGGTTACGGTTCATTTGTAGGCTTCCTCTCATTGGCATCAAAGTTCTATGTGCATTAA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K24272 DENR, TMA22; density-regulated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148532 lncRNA downstream 159846 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 208694 20168118 ~ 20168331 (-) True G118518
TU148507 lncRNA downstream 224038 20152727 ~ 20152987 (-) True G118515
TU148494 lncRNA downstream 252537 20116451 ~ 20124488 (-) True G118502
TU148464 lncRNA downstream 295362 20081388 ~ 20081663 (-) True G118479
TU148709 lncRNA upstream 57692 20438959 ~ 20443273 (-) True AMCG00018788
TU148726 lncRNA upstream 101617 20482884 ~ 20485106 (-) True G118692
TU148731 lncRNA upstream 225561 20606828 ~ 20607086 (-) True G118696
TU148739 lncRNA upstream 263618 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 298013 20679280 ~ 20679555 (-) True G118715
AMCG00018776 mRNA downstream 14089 20349576 ~ 20362936 (-) True AMCG00018776
AMCG00018779 mRNA downstream 55394 20313185 ~ 20321631 (-) True AMCG00018779
AMCG00018778 mRNA downstream 67308 20303764 ~ 20309717 (-) True AMCG00018778
AMCG00018780 mRNA downstream 97487 20229171 ~ 20279538 (-) True AMCG00018780
AMCG00018777 mRNA downstream 151968 20218377 ~ 20225057 (-) True AMCG00018777
AMCG00018788 mRNA upstream 61314 20442581 ~ 20458617 (-) False AMCG00018788
AMCG00018787 mRNA upstream 77688 20458955 ~ 20466043 (-) True AMCG00018787
AMCG00018785 mRNA upstream 90272 20471539 ~ 20476529 (-) True AMCG00018785
AMCG00018790 mRNA upstream 107668 20488935 ~ 20523819 (-) True AMCG00018790
AMCG00018795 mRNA upstream 206322 20587589 ~ 20601750 (-) True AMCG00018795
TU148462 other downstream 297143 20078088 ~ 20079882 (-) True G118477
TU148412 other downstream 388857 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1329448 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1902780 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 2773177 17603356 ~ 17603848 (-) True G117899
TU148710 other upstream 63230 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 108944 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 222251 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 222251 20603518 ~ 20605820 (-) False AMCG00018794
TU148773 other upstream 315567 20696834 ~ 20697827 (-) False G118727

Expression Profile