RNA id: AMCG00018787


Basic Information

Item Value
RNA id AMCG00018787
length 2163
RNA type mRNA
GC content 0.53
exon number 10
gene id AMCG00018787
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20458955 ~ 20466043 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGTTGTCGTGGCTGTGTGCTGTAATCTTTTGTTCATAGTGGTCGACATAGTAGTCaccacagtactgtacattcaTGGGACCAGGCTAGCCCTGTTTAAGGAGGACTTGCTCAACTTTGACATGTTCCATTCCACGCTGGACATCTGGGTGACAGTTTTGGTCAGGGCATCCTGGCTGCTAGGAGCCTGTGTTGGTGTGTGGAGAAACACAGCTGAAGGGCCCAAACGGGTGTCGACCTGTGACAGTTTGACCATCTTTCTGTGCCTGGTGATCATGGTGTACGCCATCACCAAGCTCCTGCTGTTTTCTGAGAATGGGGCCTCCCTGTCCAGTCCCTGGTTCCTGAGCCTGTTTACATGGACGTGTGTCTCCTCACTGGCAACAGTGTTTCTCTGGAAAGTGCTCGCCGCCGTCAAGCCATTGAGACGGAACTGGAAAAACCCACCAGCCAGCGAGAGCTCAGGAATAAAAGATCAGCTGCTGGGCTCGGAGGATGACGGGAGTGGAGGTCATGctgagagggaggaggaagTGAGGGATGAAGAGCAAAGCGACAAGGAGAACGGGAAGAAGGAGCCAAAGGGAGAGGCGCCAACTACGGCCACAGTGGGCCGACTCTTAAAGTACTGCAAAAAGGATGCTGGCCTCCTGGGAGTGGCCTTTTTATTTCTCCTGATTTGTGCTTTCTgTGAAGCCTTCATCCCTTATTACACTGGCCAAGCGATTGATGGGATTGTCATCCACAAGAGCATGGCTTACTTCACCCAACCCATTGTGATTTTAAGTGCGCTTGCTTTCGTGAGGTCGCTGATCCACCAAGAGATGGGATTCTTTGATGAGAATCACACAGGCGATATTATCTCCCGCCTGACCTCGGACACCACGCAGGTGAGTGACCTGATCTCAGAGAACATCAACCTGTTCCTGCGCAGCCTGGTAAAGAGCCTGGGCTACTGCGCCTTCATGTTCACCATGTCCTGGAAGCTCTCCCTGGTCACGTTCATGGGCTTCCCCTTCATCGCCATTAAACTGGCCAAGGATGTCCAGAATGCCCTTGCCCAAGCCAACAAGGTGGCAGAAGAGTGCATCTCGTCCATGAAAACGGTCAGGAGCTTTGCCAACGAGGAGCAGGAGGCAGACACATACTTTGGGAAGCTGCAGGAGATGTTCCAGCTGAATAAGAAGCAGGCCCTGGCCTACACCTGCTATTTCGGGCTTATGCAAGGAGTGGGGGCTGCGGAGAAGGTGTTTGAGTTTATGGACCGCAAACCGAAGCTGTTGAATGACGGCCAGCTGGCTCCAGACACTTGTAAAGGACTTGTGGAGTTCAAGAACGTGACATTCTCCTACCCTACACGCCCCGACACCCAGATATTAAAGAATGTGTCCTTCACAGTGAGGCCCGGTGAGGTGACTGCCCTGGTGGGGCCCTCGGGCAGTGGGAAGAGCTCCTGTGTCTGCCTACTGGAGAATTTATACAGGGCACAGGAAGGCGAGGTGCTGCTGGATGGCCGCCCAGTGCAGGACTACCAGCACAGCTACCTACACTCCAAGGTGTCTCTGGTGGGACAGGAGCCAGTACTGTTCGCCCGTTCCATTGAGAAGAACATCACCTATGGCCTGAGTGACTGTTCTTTCGAAGAGGTGGTTcaggctgcagtgcaggccaGTGCTAATGACTTCATAACTGAGCTGTCCTGCGGCTACAGCACAGGTGTGGGTGAGAAGGGCGCACAGCTGTCTGGAGGGCAGAAGCAGCGTGTAGCCATCGCTCGCGCTCTCATCAGGAACCCCCACGTCCTCATTCTGGACGAGGCCACCAGCGCCCTGGATTCAGAGAGCGAGCACATTGTTCAGCAGGCCTTGAGTGAGATCATGCACAAGAACACAGTTCTGGTGATAGCACACCGGCTGAGCACAGTGGAGCAAGCCAATAACATCATCGTGATCGACAAGGGCTGTGTGGCAGAACAGGGCTGCCACAAAGAGCTAATGGCCAAGGGAGGCCTATATTCCAAACTGGTTCAGCGACAGGTCCTGGGGATAGACACAGAAACTGTCATTCCGAAACCACCAATTAATTACACATGGCAGCTGGtgagaaagaaacacaaaaaacaggaaGGCAGTGAGTCGGAGGAAGATTTTCGCATGTAA

Function

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0031090 organelle membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0046977 TAP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05656 ABCB9, TAPL; ATP-binding cassette, subfamily B (MDR/TAP), member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148709 lncRNA downstream 15682 20438959 ~ 20443273 (-) True AMCG00018788
TU148532 lncRNA downstream 241776 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 290624 20168118 ~ 20168331 (-) True G118518
TU148507 lncRNA downstream 305968 20152727 ~ 20152987 (-) True G118515
TU148494 lncRNA downstream 334467 20116451 ~ 20124488 (-) True G118502
TU148726 lncRNA upstream 16841 20482884 ~ 20485106 (-) True G118692
TU148731 lncRNA upstream 140785 20606828 ~ 20607086 (-) True G118696
TU148739 lncRNA upstream 178842 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 213237 20679280 ~ 20679555 (-) True G118715
TU148759 lncRNA upstream 214567 20680610 ~ 20681038 (-) True G118716
AMCG00018788 mRNA downstream 338 20442581 ~ 20458617 (-) False AMCG00018788
AMCG00018786 mRNA downstream 77688 20377025 ~ 20381267 (-) True AMCG00018786
AMCG00018776 mRNA downstream 96019 20349576 ~ 20362936 (-) True AMCG00018776
AMCG00018779 mRNA downstream 137324 20313185 ~ 20321631 (-) True AMCG00018779
AMCG00018778 mRNA downstream 149238 20303764 ~ 20309717 (-) True AMCG00018778
AMCG00018785 mRNA upstream 5496 20471539 ~ 20476529 (-) True AMCG00018785
AMCG00018790 mRNA upstream 22892 20488935 ~ 20523819 (-) True AMCG00018790
AMCG00018795 mRNA upstream 121546 20587589 ~ 20601750 (-) True AMCG00018795
AMCG00018794 mRNA upstream 137452 20603495 ~ 20606743 (-) True AMCG00018794
AMCG00018796 mRNA upstream 142852 20608895 ~ 20624686 (-) True AMCG00018796
TU148710 other downstream 1432 20444497 ~ 20457523 (-) False AMCG00018788
TU148462 other downstream 379073 20078088 ~ 20079882 (-) True G118477
TU148412 other downstream 470787 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1411378 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1984710 18466368 ~ 18474245 (-) True G118075
TU148728 other upstream 24168 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 137475 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 137475 20603518 ~ 20605820 (-) False AMCG00018794
TU148773 other upstream 230791 20696834 ~ 20697827 (-) False G118727
TU149076 other upstream 1614421 22080464 ~ 22113695 (-) True G118936

Expression Profile