RNA id: TU148709


Basic Information

Item Value
RNA id TU148709
length 4315
lncRNA type sense_over
GC content 0.39
exon number 1
gene id AMCG00018788
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20438959 ~ 20458617 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttatatgcaGGGAGTGCATATGCTGTGTGTCATGTAAATGCCTGAATATTTTAATAGCAAcagcaaacacaacaaaaacgtGAATTTCTTAGTTGAGTCggaaacctttttttatatattaaaaaaacagagggAGGTAtatattttgagtttttttcctAACATTTAATTcgcttaaaaaagaaaaccaaaataaattctATTTCTGCTCCTTTCTGGCTATCTAGGGCTGAATGTGGTGTGCATTTTAGTAAGAGTATTTGCTGTTGAGTGAAGCATTTTGCCTGAATATTTCATATGGTACCGATTTCGGTTTTGTCCTCTGTTGTAcggatggagaaaaaaaatacgtATTTGAATGTCTTTTGCTCGTTTGTTTAGTTCCtgcattataaaaaatgttCCACCCATTTCATGACAGACAGCTTTACAGTAGACATGGATAACGGCAAACAACTGACTTTCAGCTGTGCCAACGAGAGTGAGAAAACATTATGCAAACAGAAGACTGAGACTATACTGTGCTGTTTTATAAACGTACTAAAACCAGATCTAGATTTTTATGTCATGTTACTTAAGAGGGTTTTAGCATTTTTGATGACCAggttaaaaaaagcaaacctgTAGCCAAAGATGTTAAGTTTCTTtgttatttgctttttgtttttcctatttcaGTACTTAAGAcattagtgtttttaatatatatatatatatatatatatatgagatttAATGATtagaatatttcaaaataatggaaaaactgGATAATATCTAGATATTCATGGGGGAGAAATAATAGGAATCCATACAATCATTTTaggaataatacaatttcactaACAAGCTGCCCCGTCCTGCCGATAAACTTAGTTGAGAACTACATATCTCTAACTTTTAATAGTGGCATCtgtaatgtgcatttttttttaaattgtttttgcaAAGCAATTTCAGGGAGTATGAATTTAATAAGCATTTATCACAAACTAAGGAGAGAATACTCTAGGTGCTTTTAACTTCAGTCCCCTATATCATGCCTATGTGATGTATATTACTAAAAACAACAGAgtgaaaaacattgaaaccTGCAAGCCCTTCCTTCAAGGGGATTTGTTTGAACATAGTCTATATGCAGTAGAAATGTAGGTAGAAGGAGAACACTCGTGGCTCCCCTGTGGGTTGCTGGGGAAGAGTAGGGGAGCAGTGGCTGACTGGTGATCGGTGAAGGGGGTTTGACCTGTTGTGTGAATGTATACAATGGCAGTGCGGCGCAGTCCGAGGGCTGTGCAGACGCTAATACCGCTCCAATCCGTACACTGTATCTCCGCAACCTCATCCCAGACCAGCTAGATCTGGAGAGCTCCATGGTacttctgagagagagagaagggagagctTTATTTGTATGGGCCCATCTAgatttgtaaaaagaaaatgtatatacacgCATGCTTTTTTGTTCtataaaaataagaagcaaTAAAAGTAGGTAGGTGAAGGTAAAAGACAGTAGGTGTGTTTGATAGGCTCATGCTGTATCTCAGGATAGGTTAAACCAAGCACATTTGCTATTGTTGTCTATTGTGAGAGAGGGGAGTTTAAGAaggcagccccccccccccaaattactgtgctttactggctgcatacttttgttttacccagaaaatagtttttgttaattgttGATCAAGTCTGTGGGGAAGAATACTTAACAGGAAGCAAATAACACAGCGAGTCTCCAGCCCTCCTCTCATTGTGACATAGCAACAGAAAGGGTTTGCCAGCCCCcagctgtgtgtcactgtgtggcATCGAGTATTACTTCCTGGAATAGCATGTTAGTTTTAACATTTCCTGCTCAGCCCCCATTGCAGTAAACGAGAGCTGTTTTACACTGAATAAAGCCTTGTCCAGAGACAGCTGAACTCATAGTGTCTCATTCCTCTGGACTTGTCAGGTGTCCTCAGAAGGCTGAGATGTGACAAGGTCTATGAACCAAAGTCTCTACAGTACTGTTCTTCACAGGTGTTAACATTGCAAACCAGGAACTGTAAACTCGGGTTCCTTTTTGATATCTGAAATGAGTGCCCCTCTATTTCTATGCATCATTATACACATCCAACACAGGGTCCTCCCCAGAGAGTGAAGCCGTGGTGCTGTATCATCACTCTAGCACTTTGATCTCCAGCTCTGATTTGAAGATCTTGGAGGTGATATTGTATGCAGTTGATTTGGTGTCATTTATAGTGCTAGACTACGGGAACTGTCTTTGGGTGTCACAAAAAAACGTCTTGCTTCAGCTTCCCCTATTGACCAATACTGATGCCTTTCGCCCTCCTAATGACCATCTTGGGTTGAACTTCCGGAGGAGAACTCTGcagtgtatatagatagatagatagacagacatcTCTCTAGctgtctatctatgtatctgtaTACCAACACACACCATGAACAGACCTTGTTAAATTGTACAACTGAAAACTGAACTGTGTACCTTTCTCACATTGTTTATCCTCTCAGAAGGATTGTGGTgaaatagtttgtatttacttcttctttgtatatatactctcccaccccacccccaaaacaaataaaaccttaGTATAGTAATATGAtctgtacattttcagtttgtaaggttttgtttttttatttatgttgtatgcTTACACTTCTAtaacttgtaaaaaaaaaaaaaatctgatgtgTCATGTTATTTTTCCGATACTCTTATCAGGTACAAGTGCCACAGTATGAACATCTAACAACCTGCTATACTGTGCTTCTAATACTCTCCCACCGAAGCCATCGCTCCTATCTGAGTGTACAGACTCTTTCTGCGGTTAACTGCTGGGATTCATGTCTTCAAACTAACAGGGAGATTTTATACAAACCAATGAACACTACAAATAACGTATGATGGCCTTCTGTATATGTCTGGGCCTTCGTTTTGTACCAGCCTACATATCGGTAGCATATCTGACCACcaaatttagttttcttatttctttttccTGTTGACTTTGTATGGTGATTGCAGCCCTGTTGTAAATAGCTCCAGAACTTAACctgtttgtatatttacattaatctgGATGTTGTCTTTCTCTCTAGAAAGAGGTAAAACTAACTAGTGGCTAGTGTTTTACATTATTCTGGTTTCATAAACTGGCATAAAAACAAGGAATGCCGTAGTACAGGTGCTCTAATTGGACCTTCATTTCACCATTGTCTATTCCTCTGGAAGGACTGGAATGCTGTGAAACTATTCAACAGCGCATACGTGCCTCAGCAGAATAGAAGAAGTTGGCGGCGGCGTCAGGGCACAGAGACTCAGCCCGTGAATACCGTGTGTGCTCTCTCTGCTCCGTTCATTCACCAGTTTAAGCAGCTCTTCTGGATTGAAGAAGGCCAGAGTGGCTTTGGGCTGCAGGAGAGAAGTAATGTGTATTTTCACTAGCCGTGGATACCTGTCTGCATGTCTGTGCACACGGAGCCAGTTTCTGTGATGTACGGGACCCCTGATTCCTCCGGAGGCCGTGCGTGACCTCCCCTATGCTTGGTTCTTTTTGTGaaattgctgttatttttatggattttttttttttttttatgaatacaaacacaataatggAGAGACTGGACTAGCAAGGGAACCAATCCTGGTTCTTACATAGTCAGCTGAAAATAAGCCATCAGCCCTGCGCTGACTAACACAACCCAAAGCAATCGCAACTCTCCAGCTACTCCAGCACTTTACTGTACAGGGTTAGGGATGTTGTCAGTGGCAGATTAGCTATTCAGGCAATTATAGAGTCGGGGTCACATTGTCCTCAAATCTGGGTGCAGCAAAATAAGCCATTTGCCTTGATTgtcaatgtaataataataagtataccAACTTAATAGATTGCCAAACTACCTGTGAGAAAACCAGCATGTTGGTATAAAAAAAATTTTtcctgtatatgtgtgtgtgttttactttctttttctgtctgcaTCTGAGACAAACATTTGTGTTCATCCTTGATGTTGATGTATCCCTCTCAGTGTGAACATGGACAACAGTCAAAACATAGACCTTTTGTGACATACAGGCCTCATTCCTGTACTGTGCTTTCAGAAACCGCTGTTTTATAATGTAAGATAGATTCTTGTACACTCCTAATGTAAAATAACTCGATTCTGTATTGTAATACTGTGCTGTATGACTAATGAAGATTGTAGTGGTGGACTGCATAAGTTACCTCTTGACTATTTTAAGTCtaataaataagatgtttttatatctgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148532 lncRNA downstream 221780 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 270628 20168118 ~ 20168331 (-) True G118518
TU148507 lncRNA downstream 285972 20152727 ~ 20152987 (-) True G118515
TU148494 lncRNA downstream 314471 20116451 ~ 20124488 (-) True G118502
TU148464 lncRNA downstream 357296 20081388 ~ 20081663 (-) True G118479
TU148726 lncRNA upstream 39611 20482884 ~ 20485106 (-) True G118692
TU148731 lncRNA upstream 163555 20606828 ~ 20607086 (-) True G118696
TU148739 lncRNA upstream 201612 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 236007 20679280 ~ 20679555 (-) True G118715
TU148759 lncRNA upstream 237337 20680610 ~ 20681038 (-) True G118716
AMCG00018786 mRNA downstream 57692 20377025 ~ 20381267 (-) True AMCG00018786
AMCG00018776 mRNA downstream 76023 20349576 ~ 20362936 (-) True AMCG00018776
AMCG00018779 mRNA downstream 117328 20313185 ~ 20321631 (-) True AMCG00018779
AMCG00018778 mRNA downstream 129242 20303764 ~ 20309717 (-) True AMCG00018778
AMCG00018780 mRNA downstream 159421 20229171 ~ 20279538 (-) True AMCG00018780
AMCG00018787 mRNA upstream 15682 20458955 ~ 20466043 (-) True AMCG00018787
AMCG00018785 mRNA upstream 28266 20471539 ~ 20476529 (-) True AMCG00018785
AMCG00018790 mRNA upstream 45662 20488935 ~ 20523819 (-) True AMCG00018790
AMCG00018795 mRNA upstream 144316 20587589 ~ 20601750 (-) True AMCG00018795
AMCG00018794 mRNA upstream 160222 20603495 ~ 20606743 (-) True AMCG00018794
TU148462 other downstream 359077 20078088 ~ 20079882 (-) True G118477
TU148412 other downstream 450791 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1391382 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1964714 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 2835111 17603356 ~ 17603848 (-) True G117899
TU148710 other upstream 1224 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 46938 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 160245 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 160245 20603518 ~ 20605820 (-) False AMCG00018794
TU148773 other upstream 253561 20696834 ~ 20697827 (-) False G118727

Expression Profile