RNA id: AMCG00018789



Basic Information


Item Value
RNA id AMCG00018789
length 708
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00018789
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20457965 ~ 20463349 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGGCGCTGGTGGCCTCGTCCAGAATGAGGACGTGGGGGTTCCTGATGAGAGCGCGAGCGATGGCTACACGCTGCTTCTGCCCTCCAGACAGCTGTGCGCCCTTCTCACCCACACCTGCggagacacacatacatttacagaCACGAGGCAACatcaaaaaccaaacaaagctGGCACACCAAACTAAATTGTTTCAAAATTCAAGCAGGAAATTCACCTGTGCTGTAGCCGCAGGACAGCTCAGTTATGAAGTCATTAGCACtggcctgcactgcagcctgAACCACCTCTTCGAAAGAACAGTCACTCAGGCCATAGGTGATGTTCTTCTCAATGGAACGGGCGAACAGTACTGGCTCCTGTCCCACCAGAGACACCTGAAAATGGCTGCTGTCATTCTCACCATCAATGAAGCTAAAGTAATGCAACTCTCAGCTGCTGAGGCAAAGCCGACAGGGGCCCCCATTGCTTCAGGAGCCACCCCTGCACAGACTGACCTTGGAGTCTGGAACATCTCCTGCAGCTTCCCAAAGTATGTGTCTGCCTCCTGCTCCTCGTTGGCAAAGCTCCTGACCGTTTTCATGGACGAGATGCACTCTTCTGCCACCTTGTTGGCTTGGGCAAGGGCATTCTGGACATCCTTGGCCAGTTTCTGTGCAGAGATGGAAAGGGATGACAGCATTCAAGCTTTCCATAATCCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU148629 lncRNA upstream 14736 20438960 ~ 20443229 (+) True G118608
TU148616 lncRNA upstream 76523 20377288 ~ 20381442 (+) True G118601
TU148612 lncRNA upstream 83153 20372219 ~ 20374812 (+) True AMCG00018781
TU148577 lncRNA upstream 155007 20302670 ~ 20302958 (+) True G118572
TU148570 lncRNA upstream 158135 20279288 ~ 20299830 (+) True G118566
TU148639 lncRNA downstream 27512 20490861 ~ 20491106 (+) True G118618
TU148641 lncRNA downstream 36325 20499674 ~ 20500210 (+) True G118620
TU148642 lncRNA downstream 37601 20500950 ~ 20501433 (+) True G118621
TU148643 lncRNA downstream 40767 20504116 ~ 20504507 (+) True G118622
TU148645 lncRNA downstream 53910 20517259 ~ 20517494 (+) True G118624
AMCG00018783 mRNA upstream 24310 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018784 mRNA upstream 59628 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018781 mRNA upstream 83218 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018775 mRNA upstream 109023 20322418 ~ 20348942 (+) True AMCG00018775
AMCG00018774 mRNA upstream 145409 20311158 ~ 20312556 (+) True AMCG00018774
AMCG00018782 mRNA downstream 13777 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018792 mRNA downstream 138662 20602011 ~ 20603279 (+) False AMCG00018792
AMCG00018793 mRNA downstream 167654 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018791 mRNA downstream 178980 20642329 ~ 20645241 (+) True AMCG00018791
AMCG00018799 mRNA downstream 207487 20670836 ~ 20678821 (+) True AMCG00018799
TU148611 other upstream 83153 20373996 ~ 20374812 (+) False AMCG00018781
TU148559 other upstream 197025 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 483235 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 1007337 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1736622 18719206 ~ 18721343 (+) True AMCG00018702
TU148644 other downstream 50811 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 129387 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 130017 20593366 ~ 20594139 (+) True G118636
TU148663 other downstream 138607 20601956 ~ 20603315 (+) True AMCG00018792
TU148789 other downstream 292280 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile