RNA id: TU148728


Basic Information

Item Value
RNA id TU148728
length 338
RNA type TUCP
GC content 0.58
exon number 2
gene id AMCG00018790
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20488935 ~ 20523819 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGGGTGACCACACATTTGCAGACAGCTACCTGACCGTGCTGCCCAGGGGCACCGAGTTTGTGGTGTTCAGCATTGATGGCTCCTTTGCCGCCAGCGTCTCCATCATGGGCAGCGACCCCAAAGTCAGAGCAGGAGCTGTGGATGTTGTCAGGCACTGGCAGGACCTGGGCTACCTGATCATCTATGTGACGGGGCGGCCGGACATGCAAAAGCAGAGGGTAGTGGCCTGGCTCTCCCAACACAACTTCCCACACGGCATTGTGTCCTTCTGCGACGGTCTGGTCCATGACCCTCTGCGTCACAAAGCCAACTTCCTCAAGTCACTCATCACTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148726 lncRNA downstream 5105 20482884 ~ 20485106 (-) True G118692
TU148709 lncRNA downstream 46938 20438959 ~ 20443273 (-) True AMCG00018788
TU148532 lncRNA downstream 273032 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 321880 20168118 ~ 20168331 (-) True G118518
TU148507 lncRNA downstream 337224 20152727 ~ 20152987 (-) True G118515
TU148731 lncRNA upstream 116090 20606828 ~ 20607086 (-) True G118696
TU148739 lncRNA upstream 154147 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 188542 20679280 ~ 20679555 (-) True G118715
TU148759 lncRNA upstream 189872 20680610 ~ 20681038 (-) True G118716
TU148760 lncRNA upstream 190386 20681124 ~ 20681365 (-) True G118717
AMCG00018785 mRNA downstream 13682 20471539 ~ 20476529 (-) True AMCG00018785
AMCG00018787 mRNA downstream 24168 20458955 ~ 20466043 (-) True AMCG00018787
AMCG00018788 mRNA downstream 31594 20442581 ~ 20458617 (-) False AMCG00018788
AMCG00018786 mRNA downstream 108944 20377025 ~ 20381267 (-) True AMCG00018786
AMCG00018776 mRNA downstream 127275 20349576 ~ 20362936 (-) True AMCG00018776
AMCG00018795 mRNA upstream 96851 20587589 ~ 20601750 (-) True AMCG00018795
AMCG00018794 mRNA upstream 112757 20603495 ~ 20606743 (-) True AMCG00018794
AMCG00018796 mRNA upstream 118157 20608895 ~ 20624686 (-) True AMCG00018796
AMCG00018798 mRNA upstream 146972 20637710 ~ 20641876 (-) True AMCG00018798
AMCG00018797 mRNA upstream 154476 20645214 ~ 20662242 (-) True AMCG00018797
TU148710 other downstream 32688 20444497 ~ 20457523 (-) False AMCG00018788
TU148462 other downstream 410329 20078088 ~ 20079882 (-) True G118477
TU148412 other downstream 502043 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1442634 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 2015966 18466368 ~ 18474245 (-) True G118075
TU148729 other upstream 112780 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 112780 20603518 ~ 20605820 (-) False AMCG00018794
TU148773 other upstream 206096 20696834 ~ 20697827 (-) False G118727
TU149076 other upstream 1589726 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 2313607 22804345 ~ 22806338 (-) True G119144

Expression Profile