RNA id: AMCG00018791


Basic Information

Item Value
RNA id AMCG00018791
length 2182
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00018791
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20642329 ~ 20645241 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCCCTGGCCAACCTGGCACCGACACCACGGAACCGAAATCGTGCGAGAACGGCTGGTGTTTCCACACGGAGTGTTTTTTAAGATGCGCTTCAAACGAGCCGCCTGCGGAATGAGAGCAGTGCTGTAGATCGAATAGGATTTCCATGGCGGAttatcaaaagaaagaaatcAGAATGAGTGAGTGGACCCCCGTGGCGACGGTGTACGACCCCCTGAAGGCGGGCAGCATCGACGGCACAGATGTGGAGCCCCACGACCGTGCAGTGTGGAGGGCCATGGTGGCTCGCTACGTCCCCAACAAGGCTGTCGTAGGCGACCCCCAGCTCACACTCTTCGTCGCCCGGCTCAACCGCCAGACCACAGAGGAGAAGCTGCGGGAAGTCTTCTCCAAATATGGCGACATACGGAGGCTGCGCCTGGTGAGGGACGTGGTCACCGGCTTCTCCAGGGGCTACGCCTTCATTGAGTACAAGGAGGAACGCTCGCTAATGAAGGCCCACAGAGACGCCAACAAGATGCTGGTGGAGCAGCATGAGTTGTTTGTGGACTTTGAGCAGGAGAGGACGCTCAAAGGCTGGGTGCCCCGTCGGCTGGgcggggggctggggggcaAGAAGGAATCGGGACAGCTGAGGTTTGGCGGGCGGGACAGGCCTTTCCGAAAGCCCATCAATCTGCCCCTGATGTCCAGCGACAGTAGAGCACCGCCCCAGGATCGGCCGCGTGACAGGAGGTGGgagaagggaggagagagggatgagaggCACAGAGACCGGGATcgtgacagagacagagacagatcccctgacagggacagggacagggacagggacagggaccgGGACCgggtgagggagaggaaggaagaGCGAGAGAGGGCGAGAGAACGGAGTGACAGGGAGTGGCAGAAAGACAAGAAAGGcagcaagagagaaagagagaggagcaAGGAGAGGGAATCGAGGAGAGAAAAGGATGAGGGCCGACGCAGGGACAAGGACAGGCACAAAGACAGGAGGTGAACTGTGGGGCGACTTCTCTACAGGATGTGTCCACGCCGGATGACTAAAGCAGTCAAAATTACAGAACTGACAATCTGTACTGTTTATGGCATTCATAGAACCCATGGTGGCATTCAGGCATTGTAAAACACATATCATCGTGCAGCAGTATTGCCATATCCTCTAGGCAGGAGCCACTGATGCAGCTATTTTAAAAGGGCTAAAGTAACTAAAGGAGGAAAGTAAAAGACTTCAGTCTGTGGACTCAAACTTGTGCCCTCAAACTCAGAAATGATGCGTCAAGGAATCCGAGGAGCTCAGTGTTACTCAGTCTTTGCTCCTCTCTACTTTCTAGTGGCAAATTGACACTGATGTAAGCCTGTAACAGAAGGATGCAgtctttgtattatttctccTGTGAAATGGGCTTGTTTATATTACTGTATGATGTTCCAAAGGGCAATAATGTCTGCTAATGTATCACCCCCCAGCCCATTGACTTTGCTGTAACATGCCACTTGTGTGACAGTTGAAACTAACAGCATTTCTAATCAATAAAGCAATGctgggtgattttttttttagtgttaaAATAATGGATAATTTTGTTTCATTGCACAATAATCAGATATACAGGACTATTTTTGCTTTAGAAGGTACATTTAGTGGAGGTCACAATCTTCTACCATTGACAATTTGAATAGGATTCTTTATATAGTGTAGAGCTCTTTGGTGTCTCTGAAGGGGATGCTGCTTGTCTGCAATGCTTGCTGCATATTACTGGGGGCTACTGCAATATATGTGTAAACAGTTTTGCTTATGAAAAGATTATAAGTACTTTATTAAGCAGGCATGTATGGAGTCCATATCATATTAGTGACCTGAAAAACAAGAGTATTTCCAAGGCACCCTTCACTTTTTAAATCCCTATCAATAtctacaataatacaaaaaaagaaagtgccTTTATGGAGAAAAGCTAAAGCATGTACAATAGAATTGCAAACAAAATTGACATTCTTAACAATATACACCTTcacacagttttgtttcttttaggaTAAGCTGGATGTCAAGTACAAGATTACAGCATCACAATGTTTTCTTGCTAGAATATAAGGCCAGAGCagttatggaaaaaaaatccctttaaaaaaaaaaaaaaaaaaagtatatata

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13155 SNRNP35; U11/U12 small nuclear ribonucleoprotein 35 kDa protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148666 lncRNA upstream 21782 20607648 ~ 20620547 (+) True G118644
TU148668 lncRNA upstream 36232 20604704 ~ 20606097 (+) True G118645
TU148662 lncRNA upstream 41973 20599791 ~ 20600356 (+) True G118641
TU148661 lncRNA upstream 44211 20597875 ~ 20598118 (+) True G118640
TU148660 lncRNA upstream 44722 20597101 ~ 20597607 (+) True G118639
TU148752 lncRNA downstream 39624 20684865 ~ 20687644 (+) False AMCG00018800
TU148823 lncRNA downstream 277127 20922368 ~ 20931404 (+) True G118771
TU148961 lncRNA downstream 725669 21370910 ~ 21422770 (+) True G118863
TU149002 lncRNA downstream 1036079 21681320 ~ 21681723 (+) True G118885
TU149036 lncRNA downstream 1203174 21848415 ~ 21853057 (+) False AMCG00018820
AMCG00018793 mRNA upstream 4625 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018792 mRNA upstream 39050 20602011 ~ 20603279 (+) False AMCG00018792
AMCG00018782 mRNA upstream 157400 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018789 mRNA upstream 178980 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018783 mRNA upstream 208674 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018799 mRNA downstream 25595 20670836 ~ 20678821 (+) True AMCG00018799
AMCG00018800 mRNA downstream 34039 20679280 ~ 20695194 (+) True AMCG00018800
AMCG00018804 mRNA downstream 50441 20695682 ~ 20697892 (+) True AMCG00018804
AMCG00018803 mRNA downstream 52981 20698222 ~ 20705953 (+) True AMCG00018803
AMCG00018801 mRNA downstream 61256 20706497 ~ 20723114 (+) True AMCG00018801
TU148663 other upstream 39014 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 48190 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 49313 20592736 ~ 20593016 (+) True G118635
TU148644 other upstream 127838 20514160 ~ 20514491 (+) True G118623
TU148611 other upstream 267517 20373996 ~ 20374812 (+) False AMCG00018781
TU148789 other downstream 110388 20755629 ~ 20756220 (+) False AMCG00018802
TU148883 other downstream 542715 21187956 ~ 21189246 (+) True G118815
TU149795 other downstream 4588841 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 4839056 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 5815379 26460620 ~ 26461227 (+) True G119762

Expression Profile