RNA id: AMCG00018792



Basic Information


Item Value
RNA id AMCG00018792
length 646
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00018792
representative False

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20601956 ~ 20603315 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATCAACACgtcaaaatacaacaaactgTTCTTTTATGAGCCCAGGCCATACTGTCAAACTCTTTTAAAATTAGTGTCTGggaatgtatttgtgtgtgtgatatacTGAGGGACCGGAGTGCCAGGCTGCTGCTTCTATGCCGTCACCTCCGCTGTTTCGCCTGCTCTGGAGCTTGTCCAAGACCCTGACTTTGGGAGCCTGCTGTCCTGGACGGTTGCCGTTGTGTGGCAGACCGATGACATGGCCCCATATTCCCAGCGCCGGGAAGAAGGACTCTCTGGATCTGCCTTCGGTCAATGAAGAGGAACTGGAGGAGCAGTTTGTGAGGGGACATGGTCCAGGGGGACAAGCAACCAACAAAACCAGCAACTGCGTGGTACTGAAACACATCCCATCGGGCATCGTTGTGAAGTGTCACCAAACTAGGTCAGTGGAGATCAACAGAAAGCGAGCCCGGCAGATAATGCAGGAGAAGCTGGACGTTTTCTACAAAGGTGAAGATAGTGACATTTTGAAGcagaggaaagagggagagtggAAAAAgcaagagaagaggagaaaggCCAGGGATATTCTGGAGAGGAAGAAACGCTTCAAGGAAGGCCTGCAGGCTGACTCAGACACGGGAGGGGAGGCTGGGACATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU148662 lncRNA upstream 1655 20599791 ~ 20600356 (+) True G118641
TU148661 lncRNA upstream 3893 20597875 ~ 20598118 (+) True G118640
TU148660 lncRNA upstream 4404 20597101 ~ 20597607 (+) True G118639
TU148659 lncRNA upstream 5319 20596468 ~ 20596692 (+) True G118638
TU148658 lncRNA upstream 6431 20595173 ~ 20595580 (+) True G118637
TU148668 lncRNA downstream 1425 20604704 ~ 20606097 (+) True G118645
TU148666 lncRNA downstream 4369 20607648 ~ 20620547 (+) True G118644
TU148752 lncRNA downstream 81586 20684865 ~ 20687644 (+) False AMCG00018800
TU148823 lncRNA downstream 319089 20922368 ~ 20931404 (+) True G118771
TU148961 lncRNA downstream 767631 21370910 ~ 21422770 (+) True G118863
AMCG00018782 mRNA upstream 117082 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018789 mRNA upstream 138662 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018783 mRNA upstream 168356 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018784 mRNA upstream 203674 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018781 mRNA upstream 227264 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018793 mRNA downstream 27724 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018791 mRNA downstream 39050 20642329 ~ 20645241 (+) True AMCG00018791
AMCG00018799 mRNA downstream 67557 20670836 ~ 20678821 (+) True AMCG00018799
AMCG00018800 mRNA downstream 76001 20679280 ~ 20695194 (+) True AMCG00018800
AMCG00018804 mRNA downstream 92403 20695682 ~ 20697892 (+) True AMCG00018804
TU148657 other upstream 7872 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 8995 20592736 ~ 20593016 (+) True G118635
TU148644 other upstream 87520 20514160 ~ 20514491 (+) True G118623
TU148611 other upstream 227199 20373996 ~ 20374812 (+) False AMCG00018781
TU148559 other upstream 341071 20259377 ~ 20260940 (+) True G118557
TU148789 other downstream 152350 20755629 ~ 20756220 (+) False AMCG00018802
TU148883 other downstream 584677 21187956 ~ 21189246 (+) True G118815
TU149795 other downstream 4630803 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 4881018 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 5857341 26460620 ~ 26461227 (+) True G119762

Expression Profile