RNA id: TU148730


Basic Information

Item Value
RNA id TU148730
length 958
RNA type TUCP
GC content 0.39
exon number 4
gene id AMCG00018794
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20603495 ~ 20606743 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagacagagacgctTCAGTGAATTTcaggacatttttatttctttaatttataatgtCTCTGGGAATGTCTTACAAACCCAACCTCCACCCGCACATTGCTGGGACTTCCGTGAACACGGTGGGAAATGTGCATTCTCCCTCCACGAGCTTAGCAACGTTACAGTCCTACAGGCCGCTAGTGAACGACTACGGACCGCCCTCCTTGGGCTTTACACAGCAGGGGACCAGTGGAAATCAAGTGCCTCAAAGTAAATATGCAGAACTCCTAGCCATTATAGAAGAACTGGGAAAAGAAATTAGACCAACATATGCAGGAAGTAAGAGTGCCATGGAGAGACTAAAACGAGgtATCATTCATGCTAGAGGGCTGGTACGGGAATGCTTGGCAGAGACCGAAAGAAATGCAAGATCCTAGCTCTTGGAGAAGCCCTTTCAAACTCCACTAAAGAATGAAAACTGAACAACATTTAGAATCCCTATCTTCTAACCATTCTATGTCAGGAGAGGCAGATAGCTTTCCTAATGAACAACACATTTGACGTCTGGCCTGAGGAATGCAGAAACTAAAGTTAAAGACCAGTATATGAAATTATACTTGACAGGAACCTCCAcggttttcttattttgttttttaattttgtttcccatTTGGGAATTTCTCAACCTTTCTTGACtgcttatataaaaaaaaaaaaaaaaaaaaaaaaaaacttttgcaTGCTTGGTAGCAAATGCTcccaattcattttaaaactgcatgGCTTGTACAGGTTTAGACTGTAGCAAGGGGCATTTAATGATGGATTAGGGTCCtaagatttaatatttttaacacaCTAATACTTAGGAGACTGAGAAAAGGATAGTGCCAAATATACAACATACGGATTTGGATAAACTATTGTAATAAAGCCATTATTTGcatctttgtatgtatttattactcaGCGTaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148726 lncRNA downstream 118412 20482884 ~ 20485106 (-) True G118692
TU148709 lncRNA downstream 160245 20438959 ~ 20443273 (-) True AMCG00018788
TU148532 lncRNA downstream 386339 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 435187 20168118 ~ 20168331 (-) True G118518
TU148507 lncRNA downstream 450531 20152727 ~ 20152987 (-) True G118515
TU148731 lncRNA upstream 1008 20606828 ~ 20607086 (-) True G118696
TU148739 lncRNA upstream 39065 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 73460 20679280 ~ 20679555 (-) True G118715
TU148759 lncRNA upstream 74790 20680610 ~ 20681038 (-) True G118716
TU148760 lncRNA upstream 75304 20681124 ~ 20681365 (-) True G118717
AMCG00018795 mRNA downstream 1768 20587589 ~ 20601750 (-) True AMCG00018795
AMCG00018790 mRNA downstream 79699 20488935 ~ 20523819 (-) True AMCG00018790
AMCG00018785 mRNA downstream 126989 20471539 ~ 20476529 (-) True AMCG00018785
AMCG00018787 mRNA downstream 137475 20458955 ~ 20466043 (-) True AMCG00018787
AMCG00018788 mRNA downstream 144901 20442581 ~ 20458617 (-) False AMCG00018788
AMCG00018796 mRNA upstream 3075 20608895 ~ 20624686 (-) True AMCG00018796
AMCG00018798 mRNA upstream 31890 20637710 ~ 20641876 (-) True AMCG00018798
AMCG00018797 mRNA upstream 39394 20645214 ~ 20662242 (-) True AMCG00018797
AMCG00018805 mRNA upstream 77866 20683686 ~ 20689922 (-) True AMCG00018805
AMCG00018808 mRNA upstream 171099 20776919 ~ 20805326 (-) True AMCG00018808
TU148728 other downstream 112780 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 145995 20444497 ~ 20457523 (-) False AMCG00018788
TU148462 other downstream 523636 20078088 ~ 20079882 (-) True G118477
TU148412 other downstream 615350 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1555941 19045682 ~ 19047577 (-) False AMCG00018723
TU148773 other upstream 91014 20696834 ~ 20697827 (-) False G118727
TU149076 other upstream 1474644 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 2198525 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 4469578 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 4528951 25134771 ~ 25171644 (-) True G119538

Expression Profile