RNA id: AMCG00018795


Basic Information

Item Value
RNA id AMCG00018795
length 5273
RNA type mRNA
GC content 0.49
exon number 24
gene id AMCG00018795
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20587589 ~ 20601750 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCGTTTTGCCGTTGATGGACGCTAGAGGAGAGCTGCAAGATCGGGGTATCGCGGGCTTACTGTACCAATACAAATATGGCCCAAGTCAGCAGATATCAGATGGGCTGGGATAACAAGGGAACCTAAGAATGTCCACAGATGATAGCATTTCTGAAGATGTGTCCAGTTCAGCCGCTCCAAGCCATGAAAATGCTGAGACCAATGGCGGAAAAGAGAGCGAGGCCTCCATCATCTCCTCTGAGGACACGCCGTCAGGGCTGGCAGGGCCGGAGGAGGAGTGCGCTGCGGCCGAGTCTGTCAGGAGGCTTTGCGGGTTCCTGCAGGTGGCCCCTCGGCCTGTGAAGAGCCGGGGCCCCACCGCTCCTCTGGGCAGCAGCCCCAGCCAGAACCGAAATCTGTGTCTCGGTGAAGAAGAAGAGTTCAGCCCAGGGCGTAACCTTCCGTCGATAAACCCCAGTCCCCTTGAAACTCTGACTGCTCTGGTTAAAGAGATTCAGAGCAGTGGAGAATCGAACCCTGAGGTTTGGAAGAACTGTGAGGGCAGATGGCTGCAGCTTTTCCAGTTGGTGGAGAAGCAGTACCAGGATCAAATCCTTGCCCAGCACGAGCAATATCAGTGTCAGATTCAGCTCATACAGGATGAAATCAAGGCTCTAGTGCAGCTGCAGAACAGACAGAGTTCCCCCCAGAGCACAGACGTCCCGCTCGCCAAAACCCCTGTGGAGTCTGTGTTCCATGGGATATTGAACGGTGGCCACTCTGGACCCTTTGTCCTGCACACGCACCGCTCTGCACCGCTCAGTCCTGTCGAGGCAGGCAGGCCGCACAAGAACCGGGAGACTCCGGAGGACTCTGCCGTCACCGTGTTGCTGAGCAGCGGATATGGGACGCTGTCTGCCTCGGAACACAGTTTAAACAAGGCGGAGGACTATGACATATCGGGGGTCAAAAATGCGCTGCATGATCCCACTTCCCCCAGGAAGCTGTCGCTTGCTTTCAAGTCACAAATGGATTCTAACGCAAACAGCTCTCAGCGTGAATCAGGGGCCGCACAAGACACAACTTCCAATGGCAATCCTCCCGGCAGCTTCCCGTCTGATCAGAACCTTTCTGCTGATCAACGGCCAATCAACAGGCAAGTATTTGGGCACTCCAGTCACATTCATCTCAGTCAGCCGTTGACTTCCTGGGCGCAGAAGCAGACTCGGAAGCTGCAGAAGAGCAGAGTGGCCCAGGGCTCTCGGTCAGAGCAGCGGTCAGGCCGGAGCTCTGTCGGGAGTCCAGAAGCACATGCGGACACACCGGACGAAtctCAGTCATGCTCTGCAGCACAGTCCTCTCACTCCTTCTACCTAAGAAAGCAAAATGACAGTCCTGTCTCCCTGGGGTCTGAAGCTTCagGTCTAACATACTGGAAACTTGACGAGAATGAACTGTATCGTCCCTTACCAGACAGCTTTGACAATGGCTCTTATCTTTTCCTGCAAGAAGGATCACTGAATCTGCCTCCCAAAGATGAGCCAAGATTATCTCTATCTCTGAAAGAAATTTACCACCATAAGCAGAGCGAGGATACAAAATTTAAAGCCTGGGATTCTCCCTGTAATTCCAGGCGGTCAGCTGCACAGgtGTTGACCCTCGATCCAACTCTGCACATGAAACCACCGGACATGCAATCCGGCTTCACTTCGCCCTCCCATTTCATCAGACTGCCGTTCACTGCAAACCCCAAGCCCTCCGCTGCTGGAGCTCCCGCGATTAGCCCGGACTCCATGGCTGAAGGCCCCTCTGAAAGCCATACAGACTCTGATTGCATTTCCAACACCAGCAGCTTATCGGCAGCCCCGGTGAAAGTAAGACATAAGCCGTCCTCAGACAGGAGCGCTGTCCCGGTCCAGAGCTGGACCCTTCCCTCTACCTCGCACAAAGTGTCAAGTACAAGCAGGTCGCGTCCAGCTCTCCACAATGGAGGAATGGGCAGCAGCTCAGCGCACACAGAGAGTGAAGGCATCCACTCGACCCTCACACCTCAGTCCAGAAAGGACACCCCAGTGTCTATGCATGCCAGCCGGGCTGTGGGGCCTCTTGAAAAGACAGCATCCCTGTCCTCGTTGGAAGACCCTGTTGTCCTTTCTCTCGTCAGGCAAAACTTGAGGGAAAAACATTCACGTCACATAGCGGACCTTCGGGCTTATTATGAATTGGAGATCAGCAGTTTAAGACAAAAACTGGACTCCGTCAACAGGCCTCCGTTGTCCGATGACTTGGAGAAAACCAATCAGTGTCTAATGGAAAGGTGTGACCATCTAGAAAGAGCTCTGACTGAGGCGAGCAGTCGGATCAGAGACCTTGAAAATAAGAATCGCCATTTGGAGAAGCAGCTGGCGGATTGGCCGGACCGCTACGACACGGCCAACGCCACTGTGAAAGCGTTGCAGCAGCGCCTGGATGAAGTGAAGAACAGCAGCAAGGAGAAGGACGGCACTGTCGGCAGGCTGAAGGCCAGGCTCAAGCAGCTCGAGGAGGCTTTTCACAACGCCTACAAGGTCTCGGATGATAAGGAGGCCCAGATGAAGAAAGAGCATAAAATGTTGCAGGATCTTCTCGCAGAATATGAATCCTTAGGAAAGGAGCACGAGAGAGTTAAGgACACTTTGGTTTCAACAGAGAACAAGCTCTTTGATGCTAATGCACAGATATCTGAACTGAAGAGGATCATTTCGAAGCTTGAAACTCAAATAAAGCAGCTGGAACATGAAAATACTGTGAAGTCACGTCACAGCATGCAGAGCCATTCACAGCCTTCAGGAGCAGGcagccTGTACCACCATCCAGATGTGCATCAGTCTCCCAGCAAGACTGCGGCGGAGGCGGACGTCAGCAGAAGGAAGTGGCTTAGTCCCGGTGCAGACTACTCTATCTTCACGGGCCGGCCTCTGCAGGAGGATCAGGCCGATGATGACGGCAGGTGTTACTCACCTCCAGAGACGGACACGGCCCAGACAGACAGCTCTGCAGCGAAGGAGGCGGGGAAGAGGGACAGTCCCCTGACCCCGGTGATGAAGGCCCTGATTGAGCTGGATGAGACGAAAGGCACCGAAGGCCgagctttaaggaaatctgacaTCATCGGCAACTCAAGGTTTGGCAGTCGCCGGCCCACGGTGAGCTTCATGGAGGGCTGTGGCAGGGAGCCACTCCTGGAGAGAAACAGCGCTGTGCTGAGGACCCAGCGCCACCTGTCCCCTGTGGGGCCCCGCTCTTCATCCCTGCCCCCGAGCACCCGCAAAGCCACCCCTGCGCCCACACCCACTAAAAGGGATACAATGATAACTCCGCTGTCAGCAAAGTCAAGCCCCAAGCGCTGTCCAACGGAGAATTTCTCTCCGGGATTCAGCCACTTACTGGGCAGGGAAGACACGTCTCATACCCGGTTTGACGTACAAATAGATGAAGATGCTCATGCATCTGCTTCCCCATCTCGCAGCTCCAGTCCCAGGAAGAGACTCCAGTTTATGTCACTGGATGAATCCGGAGTAAGTCATCATCCAAGTAACTCTGGACTCAGACTTGATAGCCGTACAGAGTCGGCGATGCGGGCCGTGAGGCAGGGAGCCGTGAGCGGTCGGCCGGCCTGggaggaggaggccgagggCTGCGGGGCTGAGCTGCTGTCCCCCTACGAATCACAGCTCACTTACCAGGCCCGGCTGGAGTCGCTGGCCGACACTGAGCGGCTCTTTGACGAGCTCACGCAAGAGAAGCAGCAGATTGAGGCTGCGCTGAGTCGTGTCCCAGGTGTGGGGGGAAGAGTGACCTTGCAAGCAAGACTAGATGAAAAAGCCTTAGAAGATCGATTGGAGAAGATCAATCGGGACCTGGGGTCTATCCGTATGATTTTAAAGAGGTTCCACGTGTTGCGGAGCTCTGCCAACATATAACATGTCTGTCCACTTTGTAGATTTAGAAAGTGCACTATCATCGAGTCTaccacagtgttttatttttctttgtaccCTGAACATGATCTTCTGTGTATGTACCATATTGTATATGTTCACAGACTTTTGTACTTTTACTACTGTAGGGTATATTTTATaagttttattacagaaaacagaatTCACAAAACTTTTTTAAGGTATATTTTTAGTAATGTTCAGATTTATAaaaactttactttttttagacactttaaaaaatagagTATTATATGCTTTACACACCATTTTCAGATAAATGATGTACATTTTATACCAGCTAAGGAATGGAAAAGGGTAATTGAAATCGAATCCAGCAgtgcgttttattttattttattttattcctttatcATACGTCATTCTGCATATTTATGATTAAATGAGTGTCTGGcattatttgatgtttatttttttataatttaaagtgttGAACTTAATTCTGACATTTCCAGTAATGGTACAAAACGCATACATTTCTgcttatttacatgtttttactggattgtttaaattatatgttttgcatgttaaGATAAAGGTTATTtacatgtgtttaaatatgcaGTATAGTGGGAGAAACATGTCCACCAAGTTTCTACCTAAAAAAATCTCTTCTCTTCAGCACGAGTCTCAATAGATATTACAGAAGTTAACAAGAGAAATTACAATGCCATGCAGAAGTCCTTGTGAATATTCCTTTTCCCATTTAGctatttatgtataattattctaaagtttatttttttcagaatgaTTACATTTTGAGTTGCAGCTGATTGTCTGAACATTCCATTATATTCCAGCTCTCTGGTTGGGGCCGATtgccaataaaaacaaaaaacgagcCATTTGCTTCCATTATTCCTGccatgtgtgtgaatgtttacCTGGCATCACCTCTCTGAACTCACCAGCTCACATTGTTTACATGGACCTTCCTCATGCAGGTggttatcattatttttctggtgcaaataaaatgttatgtggGTGAGATTGTTATACATGACAAATCCTCaaccaaattatttattttctctttgtgtgGAGTTGCCACCTTTGCACTGAAACCCaccttaaaatgttatttcatatgCATTGCTATTAAATGCCTTTTTCACATTAAATGAGTttactgaatttaaaatgctttgtatCGTCATTTATGATCCAGCTGTGTGATGCACGATTCATTCTTggatagaaaaaataatttcagccTTGTCTTTTGAGAGTCCCACCCCCGACACAGTTTATTCGGTGTATATTGAAAATTGTTATGTAATCC

Function

GO: NA

KEGG:

id description
K16775 MPHOSPH9, MPP9; M-phase phosphoprotein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148726 lncRNA downstream 102483 20482884 ~ 20485106 (-) True G118692
TU148709 lncRNA downstream 144316 20438959 ~ 20443273 (-) True AMCG00018788
TU148532 lncRNA downstream 370410 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 419258 20168118 ~ 20168331 (-) True G118518
TU148507 lncRNA downstream 434602 20152727 ~ 20152987 (-) True G118515
TU148731 lncRNA upstream 5078 20606828 ~ 20607086 (-) True G118696
TU148739 lncRNA upstream 43135 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 77530 20679280 ~ 20679555 (-) True G118715
TU148759 lncRNA upstream 78860 20680610 ~ 20681038 (-) True G118716
TU148760 lncRNA upstream 79374 20681124 ~ 20681365 (-) True G118717
AMCG00018790 mRNA downstream 63770 20488935 ~ 20523819 (-) True AMCG00018790
AMCG00018785 mRNA downstream 111060 20471539 ~ 20476529 (-) True AMCG00018785
AMCG00018787 mRNA downstream 121546 20458955 ~ 20466043 (-) True AMCG00018787
AMCG00018788 mRNA downstream 128972 20442581 ~ 20458617 (-) False AMCG00018788
AMCG00018786 mRNA downstream 206322 20377025 ~ 20381267 (-) True AMCG00018786
AMCG00018794 mRNA upstream 1745 20603495 ~ 20606743 (-) True AMCG00018794
AMCG00018796 mRNA upstream 7145 20608895 ~ 20624686 (-) True AMCG00018796
AMCG00018798 mRNA upstream 35960 20637710 ~ 20641876 (-) True AMCG00018798
AMCG00018797 mRNA upstream 43464 20645214 ~ 20662242 (-) True AMCG00018797
AMCG00018805 mRNA upstream 81936 20683686 ~ 20689922 (-) True AMCG00018805
TU148728 other downstream 96851 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 130066 20444497 ~ 20457523 (-) False AMCG00018788
TU148462 other downstream 507707 20078088 ~ 20079882 (-) True G118477
TU148412 other downstream 599421 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1540012 19045682 ~ 19047577 (-) False AMCG00018723
TU148729 other upstream 1768 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 1768 20603518 ~ 20605820 (-) False AMCG00018794
TU148773 other upstream 95084 20696834 ~ 20697827 (-) False G118727
TU149076 other upstream 1478714 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 2202595 22804345 ~ 22806338 (-) True G119144

Expression Profile