RNA id: AMCG00018796


Basic Information

Item Value
RNA id AMCG00018796
length 4215
RNA type mRNA
GC content 0.47
exon number 33
gene id AMCG00018796
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20608895 ~ 20624686 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTTACTGTAGGTCACATATGATGGATCCTGGTCAGGATTTGCTCCTTGCTGCTCTGAGTGAGAGTGGCATCAGCCCAAATGATCTATTTGATATAGACCCAATGGACACTGCTGTGCCATCAGCTGTACAACAGTCAGTGCCTATAAGTGCCCTGGATTGTGGTCTGGGAACAGAACCAGCAGCAACCGTGAAGCAGGAACCCATAGTGACAATAAAGCAGGAACCAGCTGGCCCACCCACTCCTACAGTCACTGTCAGGAAACCTCAACCATCGAccacaacatttgttttgaatcagCTCAATCAGCTGCCCTCCCTGGGAACAATAGTTGTGACCAAACCATCTGTTGGTACCACATCTAGACAGACCATTACAGTGGCCAAGGTGGTTCACACCTCCACTACACCAAAGGCACCCACTACCACTGTGCGGACGACCCTGATACCGCCCAATAAGGACCAGATCCCACTGAAAGATCTGCTCAAGTCCAGCAGCCTCAATGAGCTGATGAAGCTCAAACCACCTCCAAATATTGCACAGCCTGTGGCAACAGCTACCAgttaTAGAgaagtgtcagtcaCTGAATTAAATAATGGTGTAAAAAAGGAGGTCTCAAACAAAGATGTAGCAAGAATTTGGGTCAATGATGACATTAAAATGAGGAGCTTTTCACCTACAAATAAAATACCAGGCATTAAAGAAGAGGAAGAACccgaagaggaggaggatgaagagcTGGGTCATGCAGAGACATATGCTGAATACATGCCTATGAAATTGAAGATTGGCCTGCGTCACCCAGATCCGGTAGTGGAAACCAGTTCACTGTCGAGTGTATCCCCTCCTGATGTGTGGTACAGGCTGTCTATTACTGAGGAGACCATTGACAGAGGGTGGCTTTCGGCATTGCAGCTAGAGGCCATTACATATGCTGCTCAGCAACATGAAACATTCCTTCCAAATGGGGACAGGGCAGCCTATCTAATAGGTGATGGAGCTGGAGTTGGCAAGGGCAGGACCATAGCAGGAATTATGTATGAGAATTACCTTCTTGGCAGGAAGAGAGCGCTATGGTTTAGTGTTTCCAATGATTTGAAGTATGATGCTGAAAGGGACCTCAGAGACATTGGAGCTAAAAACATCCAGGTTCATTCACTTAATAAGttcAAATATGGGAAAATATCTTCGAAGCACAATGGGAGTGTGAAGAAAGGTGTCATTTTTGCCACATACTCTTCTCTGATTGGGGAAAGTCAGTCTGGAGGAAAATACAAGACCAGATTCAAACAGCTTCTTCACTGGTGTGGAGAGGATTTTGATGGAGTGATTGTCTTTGATGAATGTCACAAAGCTAAAAATGTCTGCCCGATTGGTTCTTCCAAACCAACCAAGACTGGCTTGGCTGTCTTAGAACTCCAAAATAAGCTACCAAAGGCGAGGGTGGTATATGCCAGTGCTACAGGAGCCTCTGAGCCACGGAATATGGCATATATGAATCGGCTTGGAATTTGGGGTGAAGGAACTCCATTCAAGGAGTTCAGCAATTTTATTCAAGCTGTGGAAAGAAGagGTGTAGGTGCCATGGAAATAGTTGCCATGGATATGAAGTTGAGGGGGATGTACATTGCAAGACAACTGAGCTTCGCTGGAGTGACCTTCAAGATCGAAGAGGTCCCTTTGACACTGGACTACATTAAGATGTACAACAAGGCAGTTCGTTTGTGGGTGAGTGCCAGAGAGAAGTTTCAGCAGGCGGCCAACCTCATGGATGCAGAGCTGCGCATGAAGAAGTCCATGTGGGGGCAGTTCTGGTCCGCACACCAGCGCTTCTTCAAGTATCTGTGCATCGCGTCGAAAGTGAGGAGAGTGGTCCAGCTAGCAAGAGAAGAgataaaaaatggaaagTGTGTGGTCATTGGTCTGCAGTCTACTGGAGAAGCTAGAACACTggaggctctggaggaaggaggaggagaattAAATGACTTTGTTTCAACAGCGaaggGTGTACTGCAGTCCCTGGTGGAGAAACATTTTCCAGCCCCTGACAGACAAAAGCTCTTCAGCTTGTTAGGAATTGATTTATCAGCGAAGAAAACGCCGTCCCCTAATGACAGTGCTTCTACAGACCAGAAGGGAAAGAAACGGAAAGGTCAAGATACAAAAAAGGAAGCGAAAAAGCCTCGCAAATCAGGCGGTCTCTCAGGCAGCAGTTCCGACGAGAGCCCGAGTGATTCGGAGGCTTCAGAGAAGGACGCGTCCAGCGATAATGACAGCTTCAAGTCAGTCAGCTCGGGCGAGGAAGACGAGTACAATCCCTTCAGAGATGAATCCAGTGAGAATGAAGAAGATGaTCCATGGTTGATTAGAAAAGGGCAcaagaaaggaaaggagaagaacaaaaagaaaaagaagcgTATAGATCCTGACTCTATTCAGAGTGCCTTGTTAGCATCTGGTCTGGGTTCCACACGGCCTGCTTTTACTACTCCAGTTGTTAAAACGCCATCAGTCAGCACACCTGCTGtaaaaaaagaaagcgaCAATAACAGCTGTGTGACTAGCCAAGACGCTGTTGAAAATGCCCAACAGATGAAACGAGAGTTACTTGAAGAACTGGAAAAGCTTTCTGAGGTTCTCCCACCCAACACTCTAGATGAACTGATTGATGAACTGGGCGGTCCAGATAACGTGGCCGAGATGACTGGACGGAAGGGCAGAGTTGTGAGCAATGATGATGGCAGCATATCTTATGAGTCAAGGTcagagcttgatgttcctgtggaAATCCTGAATATCACTGAAAAACAGAGGTTCATGGATGGAGAGAAGAACATTGCCATCATTTCAGAAGCCGCCAGCTCTGGTATTTCATTGCAAGCAGACAGGAGAGTTAAAAACCAGAGGAGGAGAGTGCACATGACCTTGGAGTTGCCATGGAGTGCTGACAGGGCCATTCAGCAGTTTGGAAGGACACACCGATCGAATCAGGTGACGGCTCCAGAGTATGTGTTCCTCATTTCTGAGCTGGCTGGAGAGCAGCGCTTTGCCTCCATTGTGGCCAAGAGGCTTGAGAGCTTGGGTGCCCTTACCCACGGTGATAGAAGAGCCACTGAGTCCAGAGATCTGAGCAGGTTCAACTTTGACAACAAGTATGGACGAAATGCCCTGGAGATTGTGATGAAGTCCATTGTAAATTTGGATTCCCCCTTGGTATCGCCACCTGCTAACTTTGATGGTGATTTCTTCAAAGAAATCCGTCATGGTTTAATTGGTGTGGGGTTAATAAATGTGGAAGATCGTTCAGGGATCCTCACTTTGGATAAAGATTATAACAATATTGGCAAGTTCCTGAATAGGATTCTTGGCATGGAGGTCCAACAACAGAATGCACTATTCCAGTATTTCTCTGACACGCTAAATGCAGTTATTCAGAATGCCAAAAAGAATGGGCGATATGACATGGGCATTTTGGATCTTGGCTCTGGTGATGAGAAAGTAAAGAAATGTGATGTGAAGAAATTTCTCACACCTGGATATTCTACCTCAGGACATGTGGAGTTGTATACAGTAAGTGTGGAAAGAGGTATGTCTTGGGAAGATGCTACCCGGATTTGGGCAGAACAGATGGGACCAGATGATGGCTTTTATGTGCAGGTGAGAAATAACAAGAAGACGGCTATCCTAGTGAAGGAAGTCAACACCAAAAAGAGATTGTTTCTTGTGTACAGGCCAAACACAGGAAAGCAATTGAAACTCGAAACCTATGCAGACATTCGGAAGAAGTgtaaaaagGTACTCTCAGAGGATGCTAAGCAGCACTGGATAGATCAGTACGTCTCTTCGGCTGACATCTGTTCTCATGCCTATTGGCGAGGTAACTGCAAGAAGGCCTCAATAGGACTTCAGTGTGAGATTGGTCTCCGATGCCGAACATACTTTGTCCTGTGTGGCTCAGTTCTTAGTGTCTGGACTAAAGTAGAGGGCGTTCTGGCTTCTGTCAGTGGCACCaatgtgaaaatgcaaattgttcGATTAAGAACGGAGGATGGACAGAGAATCGTGGGTTTGATCATTCCTGCAAACTGCGTGGCTCCACTGACCAACATACTGTCCTCCTCGGACCAGTCTCAGCAGCTGgcagtgcagcagcagcaaatgTGGCAGCAGCTTCACCCACAGAGCATTAACCACTTCAGTAACACATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148731 lncRNA downstream 1809 20606828 ~ 20607086 (-) True G118696
TU148726 lncRNA downstream 123789 20482884 ~ 20485106 (-) True G118692
TU148709 lncRNA downstream 165622 20438959 ~ 20443273 (-) True AMCG00018788
TU148532 lncRNA downstream 391716 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 440564 20168118 ~ 20168331 (-) True G118518
TU148739 lncRNA upstream 20199 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 54594 20679280 ~ 20679555 (-) True G118715
TU148759 lncRNA upstream 55924 20680610 ~ 20681038 (-) True G118716
TU148760 lncRNA upstream 56438 20681124 ~ 20681365 (-) True G118717
TU148761 lncRNA upstream 56857 20681543 ~ 20681784 (-) True G118718
AMCG00018794 mRNA downstream 2152 20603495 ~ 20606743 (-) True AMCG00018794
AMCG00018795 mRNA downstream 7145 20587589 ~ 20601750 (-) True AMCG00018795
AMCG00018790 mRNA downstream 85076 20488935 ~ 20523819 (-) True AMCG00018790
AMCG00018785 mRNA downstream 132366 20471539 ~ 20476529 (-) True AMCG00018785
AMCG00018787 mRNA downstream 142852 20458955 ~ 20466043 (-) True AMCG00018787
AMCG00018798 mRNA upstream 13024 20637710 ~ 20641876 (-) True AMCG00018798
AMCG00018797 mRNA upstream 20528 20645214 ~ 20662242 (-) True AMCG00018797
AMCG00018805 mRNA upstream 59000 20683686 ~ 20689922 (-) True AMCG00018805
AMCG00018808 mRNA upstream 152233 20776919 ~ 20805326 (-) True AMCG00018808
AMCG00018807 mRNA upstream 297687 20922373 ~ 21012691 (-) True AMCG00018807
TU148729 other downstream 3075 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 3075 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 118157 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 151372 20444497 ~ 20457523 (-) False AMCG00018788
TU148462 other downstream 529013 20078088 ~ 20079882 (-) True G118477
TU148773 other upstream 72148 20696834 ~ 20697827 (-) False G118727
TU149076 other upstream 1455778 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 2179659 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 4450712 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 4510085 25134771 ~ 25171644 (-) True G119538

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005641 True 4160 mRNA 0.54 31 NC_007121.7 44309997 ~ 44355534 (-)