RNA id: AMCG00018797


Basic Information

Item Value
RNA id AMCG00018797
length 4236
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00018797
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20644885 ~ 20678437 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCGGCTGTCTTTCTGGGATTCGGCACATGCGCAGTGCGTACCTGCCATGTAGCCCGAGTGGGGCACAGCAGATTTGGGATTGCAATGGAACCGCTTCAGTTTTTATCTCATTAATCTCCAATTCCCCACAAAATGGCTGCGACAAAACTGTCAGCTATATTAGTATGTGCCTAAAGAAAAGTCCAGGTCCAGCTGTCGAAATACAATATCTGAGAGAGACGCGTTAATGCGGGCTTCTTCAGTTAGGCGGAGGAAGTTTGTCCTGCTGTGGGAAACGCACACAACCGGATCCGATCTGTATTAGCAGGAGACGGAGCCGCCAGTCATGGACGATTTCGGGTCGGCGCTGCACAAGAGCGCCACGGAGCTGACCGTCATGGACGTGTATGACATTGCCGCAATGGTGGGGCACGATTTCGAGAGGATCATCGACCGCCACGGGTCCGAGGCGCTGGAGGAACTGATGCCCAAAGTGGTCCGGGTCCTGGAGATCCTGGAGGTGCTGGTCAGCCGGAGCAGCGCCAGCCCCGAGACCGAGGAGCTGCGGCTGGAGCTGGACCGGCTGCGGCTGGAGCGGATGGACCGGCTGGACAAGGAGAAGAAGCACCAAAAGgagctggagctggtggAGGATGTGTGGCGAGGGGAGGCCCAGGACCTGCTGTCCCAGATCGCTCAGCTGCAGGAGGAGAACAAGACCCTGCTCACCAACCTCTCCCTCAGGGACACCAGCATGACTGAGGAGGACCTGCAGAGGCAGGAAGGCATGTCAGAGCGGGAGAGGCAGGTGATGAAGAAGCTGAAGGAGGTGGTGGACAAGCAGCGGGACGAGATCCGAGCGAAGGACCGTGAACTGACACTGAAGAACGAGGACATTGAGGCAttgcagcagcagcagaaccGGTTAATGAAGATCAACCATGACTTGCGACACAAGATCACGGTGGTGGAGGCACAGGGCAAGGCTCTGATCGAGCAGAAGGTGGAGCTGGAGGCCTTCGCTCAGACCCGCGAGCAGGAGCTGGGCAGCCTGAGGCAGGAAATCGGCAAGCTGAGGGACCGGCTGCAGGGAGAGTTCAGCCAGAATGGACAGGAACCCAAGATCGAGCGCTTTGAGCCAGTTCAGCGGCTATCCCTGTTCCCTCGGATTGTGGAGGTGGAAAATGAGGATGAGGAGGATGACAATGATGATGCTgatgagcagcagcagcagcaggaggaggaggaagaggcagTGATATGGGAGCCGGTGTGCGAGGAGGACCTGGCGACAGAGAGGGCAACACTTGACCTGACGGATCCCAACCGCCCACGCTTCACCCTGCAAGAACTGCGGGACGTCCTGCACGAGAGGAATGAGCTCAAGGCGAAAGTCTTTATGTTGCAGGAAGAGTTAGCCTATTATAAAAGTGAGGAAATTGAGGAAGAGGGCAACCCCTCAGCTCCGTCCCCTTCCCCCAACCTGCAGCCCAGACCGGCCACCCAGCCTGAGTCAGGGATCAAACGCCTGTTTAGCTTCTTCTCCCGAGACAAGAAACGCAACTCCCAGAGAAACGTGCGATTCGAGGAGATGCTGGGTGGCTGGGCGAGCAAAGAAGATGTGTACACAGAACAGGCACAGGAGGCCCTACAGCACCTCTGAACCGCGGACAACACCCcccatgcacacatacacacgctgCTGCGCACTGCCGGGCTCATAAACAAACGCTGGGATACAAAACCCTCACATGCACCGTAAGGAGAAGAGAtggcattaaaacaaactgaaaaagaacCGCATAAAGAGCAAGCTAACAGGAAGAACAAGTCCCAACAGAGGGCATCCAAACCCCAACCTTTACCACACTCCACAGTATTAACAGCCAGTTGGAAAATGCTTGCTAGCTTCTGATTCATTTTGAACAGCTGCACCACATCTGGgcagtctttttttgtttgtttgtttctcattcACCAGTATGGCTTCTTTCGTGCCAATGTGTGCATGGATTACAAAAATGCAGCTCAAGTTAACATCCCACCTGTTGGGATATGGTTGGTGTTACTTTAGACCGTAAGGACACTTGTGAGTGTTCTGAAACTGTAAACAGGGACATGTTGCAAATTAGTTTGCCTGGATTAAAGTCACTGGCACCTCACACAGCTGCCCACCACCTGCAGTAAAATAGCATCAGTGCTGGGGAAGAGCTGTGTCTAAGGACAAGCTGATGAGGTTTGGGGGACAGAGAGTAGTGCAGAGTATACAGACCTGGCTGCAGAACCGCTGGGAGAGGAAGCTTTTcaaataagcaaaaataaataatgtataataaaaaagaaaaggggcaGTGGCTCAGTTCTGCATTCTCCAGTTTACTCTTATTGTTCAGCATAAGGTGCACTGGTCTTAATATCAAACAATCATGTAAGTAAGATTGACAGGCAAGTGAAGCTGAAACGGGACTGGGAGGGGATCAGAGCCAGAGCGAgagaaaggaggaaaacaaaaatgttgtgaTGGAACGTGGAAGTTGCTTACAAAGAGTGTGGAGTAAGTGGGAGCAAAGTTGTACATGGGTGTACAATGTAAGGAGAGAGATTGCAGGCAAGTAGATAGCAGTGGCAAAGTTAATTTCACCAAGATCCAAAAGGGTACTGATACAATAAGACCAGTAATCCCAAAGAGCCGACTGAAGTGTTTAATTATTCAACGAAGGAATACTAATCAGTTGTTATTGGTCTCTGACACTTTAAAGTGACTAATTGACCATccatgtgtattatttatttcttagcacaTCCCCTTAaacagggtgacttacagtttacataaacatttcaaagcattacaaagtgcagtggGCATTAGGCAGTATGGGATGTGCGAGTACAGTATTTGGTTTTTAAGTACCTTGGGCTCAATTATAGACTTAGGATATAGGATTAAATGAATGCCACAAAGAAGGTCTGTATCTCTGCCCTGTTCTTTTATCCCATCAATGGATATACTGAGCTCTTTCTTTGCAGCCAAAAGGACTGTGAAGTGACTTTTTTTCCAGATGTCTAGTGTTTTGTCCTGGGCTGCAagatttcaaaatgaagaaGTACATTGATTGTACAGAGTTAGAATGCCTAAGAATTAGTTTCTAGGAGTTGCACTGTGACACTGTGGAACAGGTCTGAAGGGGAAAGCACAAACTGGACTTAAGTGTCTCACCTACCTACATTGGAAGACCAGCACTCATGTCTTCACCAGCACTTTTcagaaacaggaagtggaacTTCATCTCTGCAAACTCAGAGGACTACCTTTCTATTGTGGACATGCATCTCAGACACCCCCCTCGGCTGACTAGGGAGAGAAAACAATCTATTAGTGAATATTGGACAACAGACATGCATGTGGAATATATGCCTTTAGGAAACTGtgcctttattaaaacaaggaaaccagaaataaatccgggggtgggtggggggttgctAGGGAcataaactaatttaatgaCTACACTTTAAACCACATGCCCCATCAGTCGGAGAACCACTAGGCCTGAGTTCAATCTAGATTCCAATCCACTTCTCAGTTTTACATAACAATCCTAGAACTTCTTAGCAGCTTTCTGTGTTTGCTTCTATCCAATGGAAAACTGCCATGTAGGTCAGtaatttgtgttaatttgtattGTCCCGTTAATctaaaactatttattaatgAGAACGAAAATCTGCACACTTGTTCAGTTCCCATAGCTCAACCCAAAGCAACTGAGGTGGAAGTCCTAGATACACAATCAGTATGGTTTAGTCAAATTTCAGAACGGTTATTTTTCACATTATAGAAAaggtttgatttttgtttgttttttccccactttttGGCCTTTAGTGCAGTGGTGTCTGTTGCAATGCCTTCATTTATGGTTGCCAAAGTTCTGTGACTTAAAGTTTAAAGtggtttctgtacattttttgtttttttacaaatgctCAGCACAGTATTAACTGCAGCAAGCCAAACAGAGCACGAGGAGTAGCTCAGCCTCGACTTTCCACGCTGGTACTTtaccaaatacaaatgttgagATTGGATAGGGAAACTGCACTGCTACAATGAAAGgggcaaaaataaacaattgtgcCAAATAAAGGGTACAAAAAAACCTACAAATCTactaatttgcattttcaagtCAGATTCAAATGACAGAATTATGAACAtgatatatatacttttttttttttttttttt

Function

GO: NA

KEGG:

id description
K20173 RILPL1; RILP-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148731 lncRNA downstream 38128 20606828 ~ 20607086 (-) True G118696
TU148726 lncRNA downstream 160108 20482884 ~ 20485106 (-) True G118692
TU148709 lncRNA downstream 201941 20438959 ~ 20443273 (-) True AMCG00018788
TU148532 lncRNA downstream 428035 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 476883 20168118 ~ 20168331 (-) True G118518
TU148758 lncRNA upstream 17038 20679280 ~ 20679555 (-) True G118715
TU148759 lncRNA upstream 18368 20680610 ~ 20681038 (-) True G118716
TU148760 lncRNA upstream 18882 20681124 ~ 20681365 (-) True G118717
TU148761 lncRNA upstream 19301 20681543 ~ 20681784 (-) True G118718
TU148762 lncRNA upstream 19837 20682079 ~ 20682291 (-) True G118719
AMCG00018798 mRNA downstream 3338 20637710 ~ 20641876 (-) True AMCG00018798
AMCG00018796 mRNA downstream 20528 20608895 ~ 20624686 (-) True AMCG00018796
AMCG00018794 mRNA downstream 38471 20603495 ~ 20606743 (-) True AMCG00018794
AMCG00018795 mRNA downstream 43464 20587589 ~ 20601750 (-) True AMCG00018795
AMCG00018790 mRNA downstream 121395 20488935 ~ 20523819 (-) True AMCG00018790
AMCG00018805 mRNA upstream 21444 20683686 ~ 20689922 (-) True AMCG00018805
AMCG00018808 mRNA upstream 114677 20776919 ~ 20805326 (-) True AMCG00018808
AMCG00018807 mRNA upstream 260131 20922373 ~ 21012691 (-) True AMCG00018807
AMCG00018810 mRNA upstream 479813 21142055 ~ 21146883 (-) True AMCG00018810
AMCG00018809 mRNA upstream 486290 21148532 ~ 21175765 (-) True AMCG00018809
TU148729 other downstream 39394 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 39394 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 154476 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 187691 20444497 ~ 20457523 (-) False AMCG00018788
TU148462 other downstream 565332 20078088 ~ 20079882 (-) True G118477
TU148773 other upstream 34592 20696834 ~ 20697827 (-) False G118727
TU149076 other upstream 1418222 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 2142103 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 4413156 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 4472529 25134771 ~ 25171644 (-) True G119538

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000177_00081319_00089885.mRNA True 1286 mRNA 0.53 6 CI01000177 81319 ~ 89885 (+)