RNA id: AMCG00018798


Basic Information

Item Value
RNA id AMCG00018798
length 1928
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00018798
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20637710 ~ 20641876 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGAAACTCCGTCTGCAAACACGGCCCTGTGCGGAGCGATTGGCCCCGGGCGCCGTCACTCAGCGTGGGCAGGTCGGCTGAAGTTACAGAGAGAAGGAAGTTCAAAGAAGTGCTTGAGGAACCATGTCTGCAACGTTGTGAGAAAACAAACTATCCGATACACATCTAAACAGACTAACTCGAGCTGACTGCAAACTTGCGCCGACGCATTTTTCCTATTAACCCAACTGAACCCCTTCCGACCCGTGCGCATCAGCAGGAGCCATGGAGGAGCCGGACTCTGCCCCCGCCGTGGCGTTTGAAAAGGACGCGTTTGAACTGACGGTGGAAGACGTGTATGATATTTCGTACGTGATCGGGAGAGACTTGCTGAAGATCAGCAGCTCGGGAGAAGAGGTGTCCGAGCTGCAGTTCAAAATCGTCCGGGTCCTGGAGATGTTTGAGACGCTGGTGGACAAGTCCAGCCTCACCGTGGAGGAGCTGAAGATGGAGCGGGACAATCTGAGGCGAGAGCTGGACAGGCTCCTGGGACAGGGGTTCACCGACGGGCAGGGACCACAAATGATTGGGCCAAACAAGCTGATAGTGGACCTCAAGGACCCGGACCGGCCCCGGTTTACACTGCAGGAGCTGAAGGACGTGCTCCAGGAACGCAACCAGCTCAAAGCTCAGCTGCTGGTGGCACAAGAGGAGCTGCAAATGTACAAGAGCGGGATCCTGCCTCAGAGCGAACCGCCCATGGTAGAAGTGGATCTCCAGACGGCTTCATCCGCACCCAGCACAGTGAATGTTAAAGAAGAGAAGACGACCATCAGAAAGCTgttCTCTTTCAGTAGGAAGTAATCAGGAGATCAGAGGGATGACATCCAAGTAACATTATTATCAAGGATAACCACTATTCTGGTGTAATTGTGAGCAgtattgttttctaattaatgGAAACCAGTATTCCATAGAGCATAAGTGTTTGAGcccacacaatacaaaaaaataaccatCAATAAACTGAATGGGAATATAGAAATCTTATAGAAATCTGTTGTAGCACCTGATGCACAGCATTGAGGCCAGAGTGATATGAATACCCATTTATCAAGTCACCCTGAAAGAGGGTATTGGAGATGGAATTTGTCATGGAATATATTCAGGCCAATCTGAGgtggaaatgtttttgaatttatttaaagtagATTCACACGGAGGATCAAAGTGGAATTTCATTCCAAGGAAGACTAAAAGACAAATGTTAAGTTATGAATGAAACTGGAATCTTTGTGCAAATTATATACCACTACACAGTGATagtttaaagcattttaactAGAACATGCAAACAAAGTTTAGTACCAACACTCGATTATTGGTACTTTAAGTGTACAGGGCTTTTAAAATTGTGCACTGGAGATTGTTGCCAATAACTTATTTATTCcaccacaccccccaccccccttggCTATCTGTATAGTAAAGCAAAACCAGTCAATCACAAAGTTGAGAACTGCCTGTAAATGCCTACATCCATTGTGCaaataagcattacaaaagtagcAAATTGTTCTGCTACGATCACCtaattgttgtattttgtcaatATTGTGTGACTAAACCATACTAAAAAACCTGAAGTCTGCTTTCTACATTTCTAACTCCAATATCACGcttttgtacaatgtattttttgtttctcgtttaaaaaaaaaaaaaaaatcttgcaaGATTAAGTTTGCTGCAttataacttttaaaaacaagccaGTAAACGGTTTCAAGTATTACTCACATATTCCTGCTCAACAATTTGGAACTTCAAGACATTTTGTAATTGAACACATTATATGCTTATCTAAACAAAagtagataattaaaaaaaagttgggAAAGCccttagttttataaatatgaaaatgcatataaaaatcAGATTTAAC

Function

GO: NA

KEGG:

id description
ko03050 Proteasome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148731 lncRNA downstream 30624 20606828 ~ 20607086 (-) True G118696
TU148726 lncRNA downstream 152604 20482884 ~ 20485106 (-) True G118692
TU148709 lncRNA downstream 194437 20438959 ~ 20443273 (-) True AMCG00018788
TU148532 lncRNA downstream 420531 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 469379 20168118 ~ 20168331 (-) True G118518
TU148739 lncRNA upstream 3009 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 37404 20679280 ~ 20679555 (-) True G118715
TU148759 lncRNA upstream 38734 20680610 ~ 20681038 (-) True G118716
TU148760 lncRNA upstream 39248 20681124 ~ 20681365 (-) True G118717
TU148761 lncRNA upstream 39667 20681543 ~ 20681784 (-) True G118718
AMCG00018796 mRNA downstream 13024 20608895 ~ 20624686 (-) True AMCG00018796
AMCG00018794 mRNA downstream 30967 20603495 ~ 20606743 (-) True AMCG00018794
AMCG00018795 mRNA downstream 35960 20587589 ~ 20601750 (-) True AMCG00018795
AMCG00018790 mRNA downstream 113891 20488935 ~ 20523819 (-) True AMCG00018790
AMCG00018785 mRNA downstream 161181 20471539 ~ 20476529 (-) True AMCG00018785
AMCG00018797 mRNA upstream 3338 20645214 ~ 20662242 (-) True AMCG00018797
AMCG00018805 mRNA upstream 41810 20683686 ~ 20689922 (-) True AMCG00018805
AMCG00018808 mRNA upstream 135043 20776919 ~ 20805326 (-) True AMCG00018808
AMCG00018807 mRNA upstream 280497 20922373 ~ 21012691 (-) True AMCG00018807
AMCG00018810 mRNA upstream 500179 21142055 ~ 21146883 (-) True AMCG00018810
TU148729 other downstream 31890 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 31890 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 146972 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 180187 20444497 ~ 20457523 (-) False AMCG00018788
TU148462 other downstream 557828 20078088 ~ 20079882 (-) True G118477
TU148773 other upstream 54958 20696834 ~ 20697827 (-) False G118727
TU149076 other upstream 1438588 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 2162469 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 4433522 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 4492895 25134771 ~ 25171644 (-) True G119538

Expression Profile