RNA id: AMCG00018799


Basic Information

Item Value
RNA id AMCG00018799
length 2595
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00018799
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20670836 ~ 20678821 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGTCCACCTGCTGGAAATAGGGATTTTCCGAACGCGTACAGCAGCAAGACCGTACACGCAGTTTGTCCCTCGCAGCGCCTCGTTTTTTTCTTTACGTGGCAGTGCTAGCCGAGCTCCCCGTCTCCCCTCCTTCAGTCGCCGCACCGACACAAACTCCACCTCCGCGGTGCCTGGCTGGGGTTCACTGGGCGCTTTGGTGCTTCTGTTTCTCTCCGCTGTTCGCCTTCTTCCGGTTTGCAGACATCCATTACATTTATaccaataatacaaatataaccatccataaAGATGTTTACGTTGTCGGAGATCCTTGTCCTCGTAGCCATCTTCTCCGCCACGGCCTCCGGCTACTTCGTCAGCATAGACGCGCACGCCGAGGAGTGCTTCTTTGAACGGGTCAACTCCGGCACCAAGATGGGCCTTATGTTCGAGGTGGCCGAAGGAGGCTTCCTGGACATCGACGTGGAGATTACAGGACCCGATGGTAAACAGATTTATAAAGGAGACAGGGAGTCCAGTGGGAAATACTCTGTTGCAGCCCACATGGATGGCACTTACAAATTTTGCTTCAGCAACAAGATGTCCACTATGACCCCTAAGATTGTGATGTTCACCATCGACATTGGAGAGGCGCCAAAAGGGCAGGACATGGAGACGGAAGGTGGTGGGGATACCTGGGATGCTCACCAGAACAAGCTGGAAGAGATGATCAATGAGCTGGCTGTGGCCATGACTGCGGTCAAGCATGAGCAGGAGTACATGGAAGTGCGCGAGAGAATACATAGAGCAATTAATGACAACACGAACAGCAGGGTGGTGCTTTGGTCATTCTTTGAAGCTCTGGTGCTTGTAGCCATGACCCTTGGACAAATTTACTACCTGAAGAGGTTTTTCGAAGTGCGGAGAGTCGTGTAAAACAGCAGATTTCTGGCACTTTTCACCATTTACCAAAATCGTTTAGTCACAACATTTACTCCAAGATTGGGATTCTGACTTTTAGACTTTTGAAAAGCCTTtcaattcagcttttttttttttttttcctttgggaAATCTTTGGGTGGTTAATTTTGTGTTCctccccattttatttttaatatttttccacCTCTGTGTAATTTATGATTTTCCAACcacttgctttttaaaaaagaaaaaaagaaaaaaaaaaaaaggcaaggtCATGTTAACATTGAAGCTGTTCAGCTCGTTGGCAGATACAAACCTGTAGAGTTTGGAGAAGGCTATTTATTAGGTTTTAAACTTGCaaggttttaattttgattttgcGGCATCCAAAATGGTGAAGACAGGCCTGCCGCAACCAACAGCTCTTCTCTCTTGTTTGCAAACTACAGGTATTAAATGGGTTTGAAGAGGAATACATCTGGAGGgaaacaatcattaaaatacacctaGCTTGCCTGATTTATTTTCTGGTCTAGATCACGTCAGACTGGAATCAGTGCTGGACTCTAATGGCTACAATGAAAATTGCAACTTGATAATATACAGTaactgctttctttttctttttcttttctttttttaatgtcaatgACTCATGAGTCGAGACTGCTGTGTGGTCACAAGCtaattaattatctttatttccTTTGATAAGTGACCTTGTGGAAAGGATCTTAGCCGTTCTTTGATGTAAACAGACACAATTTGAATTCCCACCGTccctttcatatttcatattggtCCAAGGAAGTCTATTTCTTTCCACATTCAAGGCACATAGAGAATGTTTCTGTCTGGGGACAGGGTGGGGTGGAAGGGAGGTTGGGgggtctttttttccccagtatCTTAATGATGGGTTTAACACATAAAGTACATATTAGTTCAAAGGTGTGGGTGTGGATCAGGATAATGTTGTGACTGGTGTAAATTAGTtgcttgtattattttttttgtctaaaagaaaaaaaaaaaatcctttacaaATGGCAACACAATTTTGTACAATTAATTTCCTATTTGTTACAGGTATTCATGTTCCAGGTAAACATTTTGTTACTTTGGGGGAAATGGAGGTGGCAGCAGTCTGTGAATTAGGCCAGATGACTGCTGCCTGCcattacagaaatatttttgtGTAACAGCTGACACCtcagatttgaaatgtaaagatgtaaagtaaaaacaaaatgctgatgTATGTCAAATATGACCCAGGTttagtaaataataaacacaacattctttaaaactgcctgttcagatttatttatttttgcgtaATGCAATGTCTTCCTCAAAGTGCCTGTTTGCCAGGGATCAAGGAGtgggagaagtgactgagaCCACAATACTTAAATGAGTGATTCCCTTGCCCTGCCCTGGATAATGCCAATATGTACACCTAAAGCACATAGAAtggtccctccctccctcctgcagGAAACCCCACGAGATGTATTCTAGTTATATAAGTGTTATGTAAGATGTGCTGTTCTAGTTGTACAACTTAAAGAAGGGGTTGAGATACTGAGGTTTTTGCTTTTTGATCCTGAATGAATTTTACCCACCcttgtcaatttgtttttacatatgtaaataattgCAATAAAGCAGTTTTTCT

Function

GO: NA

KEGG:

id description
K20347 TMED2, EMP24; p24 family protein beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148666 lncRNA upstream 50289 20607648 ~ 20620547 (+) True G118644
TU148668 lncRNA upstream 64739 20604704 ~ 20606097 (+) True G118645
TU148662 lncRNA upstream 70480 20599791 ~ 20600356 (+) True G118641
TU148661 lncRNA upstream 72718 20597875 ~ 20598118 (+) True G118640
TU148660 lncRNA upstream 73229 20597101 ~ 20597607 (+) True G118639
TU148752 lncRNA downstream 6044 20684865 ~ 20687644 (+) False AMCG00018800
TU148823 lncRNA downstream 243547 20922368 ~ 20931404 (+) True G118771
TU148961 lncRNA downstream 692089 21370910 ~ 21422770 (+) True G118863
TU149002 lncRNA downstream 1002499 21681320 ~ 21681723 (+) True G118885
TU149036 lncRNA downstream 1169594 21848415 ~ 21853057 (+) False AMCG00018820
AMCG00018791 mRNA upstream 25595 20642329 ~ 20645241 (+) True AMCG00018791
AMCG00018793 mRNA upstream 33132 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018792 mRNA upstream 67557 20602011 ~ 20603279 (+) False AMCG00018792
AMCG00018782 mRNA upstream 185907 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018789 mRNA upstream 207487 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018800 mRNA downstream 459 20679280 ~ 20695194 (+) True AMCG00018800
AMCG00018804 mRNA downstream 16861 20695682 ~ 20697892 (+) True AMCG00018804
AMCG00018803 mRNA downstream 19401 20698222 ~ 20705953 (+) True AMCG00018803
AMCG00018801 mRNA downstream 27676 20706497 ~ 20723114 (+) True AMCG00018801
AMCG00018802 mRNA downstream 44789 20723610 ~ 20772586 (+) True AMCG00018802
TU148663 other upstream 67521 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 76697 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 77820 20592736 ~ 20593016 (+) True G118635
TU148644 other upstream 156345 20514160 ~ 20514491 (+) True G118623
TU148611 other upstream 296024 20373996 ~ 20374812 (+) False AMCG00018781
TU148789 other downstream 76808 20755629 ~ 20756220 (+) False AMCG00018802
TU148883 other downstream 509135 21187956 ~ 21189246 (+) True G118815
TU149795 other downstream 4555261 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 4805476 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 5781799 26460620 ~ 26461227 (+) True G119762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000168_01162239_01166570.mRNA True 1017 mRNA 0.46 5 CI01000168 1162239 ~ 1166960 (+)