RNA id: AMCG00018800


Basic Information

Item Value
RNA id AMCG00018800
length 5845
RNA type mRNA
GC content 0.46
exon number 33
gene id AMCG00018800
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20679280 ~ 20695194 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTGATCATGACACTATTTTTCATAACAGCAGTGCGATGAGAGCGACTGTCTGCCATGCATTGTGAGACGGAACCGACAtgtttgctgctgttgctgcccGGGACGTTTTACAGTGAAACAGGAAGGCGGAACAGCGTGTTTGTGCCACAGtggtgtttttgaaaaaaaaatggagaatgTTACTGAAGGCAGATGGGAAAGTTTACCCGTTAAACTTCACGACAGTATTTTACAAACGCTCCGTGACCTAGGTTTTAGTCACATGACTCCAGTCCAGGTGACCGGGAGTGGAAAGACATTGGCATTTGTCATCCCTATACTGCAGATTTTGCTGAGAAGAGAggagaaactgaagaaaaagcAGGTTGGGGCTCTGATTATCACTCCCACACGTGAGCTGGCCTCTCAGATTAGTGGGGTCATGGCATCCTTCCTCCAGCACTTCCCTCAGTTCAGTCAAATCCTTTTAATCGGAGGCAGTAATCCAATCGAAGACGTGGAGAAATTTAAAGAGCATGGGGGGAACATTGTGATCGGCACTCCAGGCAGGCTGGAGGACATGTTCCGGAGGCAGGCAGACGGGCTGGACCTGACCGGCTGTGTGAAGGCCCTGGATGTGCTAGTTCTGGATGAGGCTGACCGGCTGCTGGACATGGGCTTTGAGGCAAGtCTGAACGTCATCCTGGGCTACCTGCCAAAGCAGCGGCGCACAGGGCTGTTCTCGGCCACGCAGACACAGGAGCTGGAGAAGCTGGTGAGGGCCGGCCTGCGCAATCCTGTCCGCATCATCGTCAAAGAGAAGGGTGCGGCAGACACTAGCACTCAGAAGACCCCGTCCCGCCTGCTCAACTACTACACTGTGTGCAGGACAGAGGACAAGTTTAACCGGCTGGTGGCTTTCCTGCGGCAGCACAAGCACGAAAAACACCTGGTCTTCTTTAGCACCTGCGCCTGTGTGGAGTACTATGGCCGGGCCCTGGAGGCTCTGGTGTCAAAAATTAAGATCCTCTGCATCCATGGGAAGATGAAAGACAAGCGCAACAAAATCTTTACTGAGTTTCGGGCTTTAAAGAGTGGGATTCTGGTGTGCACCGACGTCATGGCCCGAGGGATCGACATTCCCGAGGTCAACTGGGTTATACAGTACGACCCTCCCAGCAGCGCCAGTGCCTTTGTGCACCGCTGCGGACGGACAGCCCGTATCGGCAACCAGGGCAATGCTCTAGTGTTCCTGCTGCCGATGGAAGAGGCTTACATCAACTTCCTGTCCATTAACCAAAAATGCCCCCTCCAGGAGATGGCACCAGTGAAGGACGTGGTGGATGTGCTACCCAAGCTGAAGGCCATGGCACTTGGGGACAGGGCCGTGTTCGAGAGAGGCATGCGGGCCTTTGTCTCCTATGTCCAGGCCTATGCCAAGCACGAGTGTAGCCTCATCTTCAGGGTCAAAGATCTGGACTTTGCTGCTCTGGCTCAGGGGTTTGCGTTGATCAGGCTACCCAAGATGCCCGAGCTGAGAGGGAAGCCACTGCCCAACTTCACCCCCGAGCCCATTGACACGGACACCATCCGATTCAAAGACAAGAACAGGGAGAGGCAGCGGAAGAAGATGCTGGCCGAGAAGCGGGAGCAGGAAAAGGACAGGCCGCAGCTGGGCAGGAGGCACTTAATCAGAAACAAATCGTGGTCCAAACAGAAGACCAAGAAAGACAGGAGGAAAAAGCTGGTGgccaaaaggaaaaaagacGAGGGCTCAGACATTGATGACGAGGACATGGACGAGTTGCTCAGTGACACCAGGCTGCTGAAAAAGCTGAAGAAGGGCAAGATCAGTGAGGAGGACTTCGAGAAGCAAGTGACGGCGAGCCAAAAGTCACAATCGGGCAGAAAGACAGGCGCCGAACAGCATGGGGCTGAATCGGATATGGAAGGCGACGAATGAAAATTAGTTGAAATGATAACGATGAaccatttttgtgtgtgtaatataaacataaatgaagagaaaaaccTAGAGCTTCCAGATGGACTTTTTGGAAGTCTCATCTTCTCCGGAAATGCACCATCCTGTTCCCATTTGAAAGCCCGTTGTTTCGGTGTGGTGCTGCACCGGTATGGACAACACTGCAGTGGCTGCTCTAGGGTGGCTTGCTGTGTTTACTGCTGCTGCATCTCAGCACATCATCACCCTGAGCTGAACTTGGTGCTCAGACCCTCCTAATCCCTGGGTACCTTTCATCGCTCACTGCTGGAGACCCGCTGGAGTCTCTCTCCTGGTgccatgtttttcttattttccctGTCCATGATATACAGCTCTACTGATTGGCCCTGTGAAGTTATACTTTACCAGTTGGAGCCCAGTAGGTGTTAATTATTTACTTCATTATGAAATGTTCTTTCTGCATTGAGATCTGTGCTTCAGATACATTCAGAATACAGTTTTGAAAGGAATGTCACTTAAAATGGCTTAAACTAAAACATGTGTTCATCTCAGTTTATTGTGTTAatttctttagaaaaaaaatattttccctttttccttAAACAACTTTATTAGATATGATATAATTTACTGTGACAGTCAGCCTGGTTACAAATATAGTTTAATGAGTTCGTCACTGACAGCGGAGGGGGTGAGCACCCCCAGGTCCGTGAAGAGGAGGGTGatgagggaggggggggtgtaGTCAATCATGGGATGCTCTTCTGCGAGATTCTTGGTTGTTTTCAGGGTGTCTGCTTTGTActTAAATTTGTCAGGTACGTCTTGCTGATTCAAAGGGTAAAGCCTGACGAATTTGAAGCTCTCTGCCACCACATAGAAAGGCTTGTTGTGGGCTTTGGAACACACTGCCATTTGGTATGTGCCAATCTTATTGATGATTCCTCCACTCTCCACTACACCTTCAGCCCCCACTATCACCAAATCCACTTTCTCCATGATGTACCCTACTGCAGCATCCAGAACTACTGTCACTGGCACATTGAGTTTTCTTAAGGCGTCTGCCATATTTTTCCtagAGTCTGGCTGGGATTCAGTCACGTAAACGGTGAAGCGCTTCTTGTCCGCAGCCGCATTCTGCAGCACTCGCAGCACCACCCTCGAGGAGGAGTGAGTCAGGATTTTAGCTCCGTCCTTGATGAACGTGTGGCAGAGTTTTGCGACCTTGTTCCTCGACAGCGATATTTTTTCCAAGAACAGTTCTCCTCTTTCCACCATCACCTTCTTGCACTGTGCTGACCGGGTGCTCCAGCGAGGTGAGGCTGATGAAGCGCAGGAAAAGCTCTCCCCCGGAAGACACGGCCACGGAGGAATCCACGCTGATCAACCTGTCGATGGCTTGCGTCAGGTTCTCCCTCAGACCCTGGATGGATCACCATTACCTTTGTGTCTCTTGAGGAACTCCAGGAGGGTGCGGATGGCTGCCACAGCAGAGGCCATGTCTGGGTCTTGTCCCATCTGACTGCGGAAATACTCCACAAGCTCTTCTTCGTccatttctgaaataaagaaaaccttcGCAGCACTTCAATCCAGACAGATGTCAGTTTCCAGTTAGCCTTCTGTACCCACAGACAGCCAATACAGCtttatgattaataaaataacctagaaatgtctttaaaataaagctgcagaaaaaaatatatagttcagCTGATTTTATCAAATCGCCTTCAAAAATTGCATCAACTTTAAGAGCAAAAAATCATGACAGCCCGACACATTTATCCACCCATGGAATAGTGAGAATCAGACTTTtacaaataactttttattttagctaagttgatgttttaaaacgaattaatattaacatttggAGAGAATTATTCCATCGCTTTCAGTGTCGCTCGTGTTTCAGAAGCTGCTTGAATGTGTCCTGTCGCGGTAAAATTACGTCATCACACCGCGACAGACACAGGAAGATGCTTTGCTGACATTTGGAGAGAAAGTGTATTTGGTTCGTTTGTGTTGCAGACATGGCTTCGGAGGACGAGATCAGTCTTCTGGTGATCGTGGTAGACGTCAATCCCATATGGTGGGGCCAACAAGCACAGAGAGAGCCCCAGTTCACCCTGTCAAAGTGTATGGATGCAGTGATGGTGTTGGGCAACGCGCACATGGTTATGAACAGGAGCAACAAATTGGCCATCATTGCCAGCCACTGTCAGGAGAGTCATTACCTGTACCCCAATAAGCACTGGAAGGCTGGCGATTTTGCTGGGGATGACACAACGTCGGGCAGCGGGGATGGCAAATATGAACTTCTGTCTGTAGCTAATGATCTCATCGCTGAAGAGATCAGAAATCTCATGGCAAGAACTGAAGTGAGGGGCCAGCAGACAGACACTTTACTGGCAGGATCACTCGCGAAAGCACTCTGCTATATCCACAGAGTGTCAAAGGAGTTGGAAGctgGACAGGAAATGAAATCCAGGATATTGGTCATAAAATCTTCTGAAGATTGTGCTTTACAGTACATGAATTTCATGAACGTTATTTTCGCTGCACAGAAGCAGAGCATACTGATAGATGCTTGTGTGTTAGACTCAGACTCTGGGCTTCTGCAACAGgcATGTGACATAACAGGAGGGCTGTATCTGAAAATCCCACAGAAGATTGCTTTGGCACAGTATTTGATGTGGGTGTTCCTGCCAGACTGTGATCAGCGCTCCCAGCTGGTCCTGCCTCCCTCGGTACACGTGGACTACAGAGCGGCCTGCTTCTGCCACCGCAATCTCATAGAGATCGGATATGTCTGCTCTGTCTGCCTTTCGATATTCTGCAGTTTCAGTCCTATCTGCACAACCTGCGAGACTGCCTTCAAGATTTCATTGCCACAAATGatgaaaccaaaaaagaaaaagttaaagcTAGCTACGTGACCGCCACCTTTGGACTGTTAAGTGATACTGGGAATCGGCGTCAGGAGAATCTAACGGACAGCACCAGAGTGTGGACTAGCTGGCAGTTATATTTCAATTTGAGTGAAGAATCggttgtgctttttaaaaaaaacatttttctacaGTTTTGTTTCCGATTTGCAAAGGACCTGGCTGGAGAAAGTTAGACTATATTCTGATTGAAGAGGTGCATCACCACCTGCGTCTTCCCATTGCTTCTGGTTTACACCTCAGCAGAAACACCATCAGGAGACCCAACCTGTCAGGGAGTTGTTGAAGTTTAAACTTCGGACGGAGACTGAAAGTACAGTTGGGAACTATAAGGAATATTTTAATGGCCCCATGTGCAACTTAGTAAAAAATCGAATGAAAAATTATAAGTAactatgattttgttttagtacTTTTGTATTGAAACAACAAAGTCCTACAAATCTTTAGGTTTTACTTATCAAAAGaccaaaatgttcatttttcttGAATAATTGTTGTCCTTAGTCAGTGATTTTCTTAACTTTTCTTAATGCTAGATAAAATAACTGCTTCGTTTGTGAATGTGATATGATTCCACATGttccatgtgtttttctttccacaatGCAAAAAGTATACTGTGAAATCTGCTTCCAAACCAAAATAGTAGCATGAATCAGATTTTATTAATGAGAAGGGAAATTCAGAAGAGCAGTTATTAGACAATTCAATAATCTTGAACAGGTGTTTGGAATTAATAGATTAACGGTTGAGTTTTATCATGAATTTCAGTGTCTGCTGATAACTgaaattgacaaattaaaaagtgtatttatttctaaattttCCCTGTTATTACTATATTAATTTTAGTAGAGACAGAACTATTTTCTGTTGAAATCAACCATGtttatatcagaaatgacaacaataaaatgtgtttctttgaaaatgta

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14809 DDX55, SPB4; ATP-dependent RNA helicase DDX55/SPB4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148666 lncRNA upstream 58733 20607648 ~ 20620547 (+) True G118644
TU148668 lncRNA upstream 73183 20604704 ~ 20606097 (+) True G118645
TU148662 lncRNA upstream 78924 20599791 ~ 20600356 (+) True G118641
TU148661 lncRNA upstream 81162 20597875 ~ 20598118 (+) True G118640
TU148660 lncRNA upstream 81673 20597101 ~ 20597607 (+) True G118639
TU148823 lncRNA downstream 227174 20922368 ~ 20931404 (+) True G118771
TU148961 lncRNA downstream 675716 21370910 ~ 21422770 (+) True G118863
TU149002 lncRNA downstream 986126 21681320 ~ 21681723 (+) True G118885
TU149036 lncRNA downstream 1153221 21848415 ~ 21853057 (+) False AMCG00018820
TU149148 lncRNA downstream 1852078 22547272 ~ 22547691 (+) True G118999
AMCG00018799 mRNA upstream 459 20670836 ~ 20678821 (+) True AMCG00018799
AMCG00018791 mRNA upstream 34039 20642329 ~ 20645241 (+) True AMCG00018791
AMCG00018793 mRNA upstream 41576 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018792 mRNA upstream 76001 20602011 ~ 20603279 (+) False AMCG00018792
AMCG00018782 mRNA upstream 194351 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018804 mRNA downstream 488 20695682 ~ 20697892 (+) True AMCG00018804
AMCG00018803 mRNA downstream 3028 20698222 ~ 20705953 (+) True AMCG00018803
AMCG00018801 mRNA downstream 11303 20706497 ~ 20723114 (+) True AMCG00018801
AMCG00018802 mRNA downstream 28416 20723610 ~ 20772586 (+) True AMCG00018802
AMCG00018806 mRNA downstream 201720 20896914 ~ 20912077 (+) True AMCG00018806
TU148663 other upstream 75965 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 85141 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 86264 20592736 ~ 20593016 (+) True G118635
TU148644 other upstream 164789 20514160 ~ 20514491 (+) True G118623
TU148611 other upstream 304468 20373996 ~ 20374812 (+) False AMCG00018781
TU148789 other downstream 60435 20755629 ~ 20756220 (+) False AMCG00018802
TU148883 other downstream 492762 21187956 ~ 21189246 (+) True G118815
TU149795 other downstream 4538888 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 4789103 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 5765426 26460620 ~ 26461227 (+) True G119762

Expression Profile