RNA id: TU148789



Basic Information


Item Value
RNA id TU148789
length 295
RNA type TUCP
GC content 0.57
exon number 2
gene id AMCG00018802
representative False

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20723610 ~ 20772586 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGATGCTGAAGTTTGTGGAAGCTGTGATGGGATACTGCGATGTGTCCAGAGAGATTAAACCCAAGAGAGAAAAGGTGGCCAAGCTGGAGAGGAACTTCTTCCAGAGCAAGAGGGAGCTGGAGCGCATCCAGAATGAGCTGGGGACCATTCAGAAAGAGCTGAAGGCCCTGGGGGACAAGTATGAGGAGGCCATGCGGGAGaagcaggagctgcaggaggagGCCGAGATCATGGAGAGGAGGCTGATCGCCGCAGACAAGCTCATCTCGGGGCTCGGCTCAGAGAACATCCGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU148752 lncRNA upstream 67985 20684865 ~ 20687644 (+) False AMCG00018800
TU148666 lncRNA upstream 135082 20607648 ~ 20620547 (+) True G118644
TU148668 lncRNA upstream 149532 20604704 ~ 20606097 (+) True G118645
TU148662 lncRNA upstream 155273 20599791 ~ 20600356 (+) True G118641
TU148661 lncRNA upstream 157511 20597875 ~ 20598118 (+) True G118640
TU148823 lncRNA downstream 166148 20922368 ~ 20931404 (+) True G118771
TU148961 lncRNA downstream 614690 21370910 ~ 21422770 (+) True G118863
TU149002 lncRNA downstream 925100 21681320 ~ 21681723 (+) True G118885
TU149036 lncRNA downstream 1092195 21848415 ~ 21853057 (+) False AMCG00018820
TU149148 lncRNA downstream 1791052 22547272 ~ 22547691 (+) True G118999
AMCG00018801 mRNA upstream 32515 20706497 ~ 20723114 (+) True AMCG00018801
AMCG00018803 mRNA upstream 49676 20698222 ~ 20705953 (+) True AMCG00018803
AMCG00018804 mRNA upstream 57737 20695682 ~ 20697892 (+) True AMCG00018804
AMCG00018800 mRNA upstream 60435 20679280 ~ 20695194 (+) True AMCG00018800
AMCG00018799 mRNA upstream 76808 20670836 ~ 20678821 (+) True AMCG00018799
AMCG00018806 mRNA downstream 140694 20896914 ~ 20912077 (+) True AMCG00018806
AMCG00018823 mRNA downstream 935091 21691311 ~ 21692108 (+) True AMCG00018823
AMCG00018821 mRNA downstream 959630 21715850 ~ 21743739 (+) True AMCG00018821
AMCG00018820 mRNA downstream 1092150 21848370 ~ 21897700 (+) True AMCG00018820
AMCG00018826 mRNA downstream 1273980 22030200 ~ 22036605 (+) True AMCG00018826
TU148663 other upstream 152314 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 161490 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 162613 20592736 ~ 20593016 (+) True G118635
TU148644 other upstream 241138 20514160 ~ 20514491 (+) True G118623
TU148611 other upstream 380817 20373996 ~ 20374812 (+) False AMCG00018781
TU148883 other downstream 431736 21187956 ~ 21189246 (+) True G118815
TU149795 other downstream 4477862 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 4728077 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 5704400 26460620 ~ 26461227 (+) True G119762

Expression Profile