RNA id: AMCG00018803


Basic Information

Item Value
RNA id AMCG00018803
length 2305
RNA type mRNA
GC content 0.51
exon number 18
gene id AMCG00018803
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20698222 ~ 20705953 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTCGAGCAGAGCATGACAGTTTGCGCAGGAGCGTCTGTATATCGCGACATTCACCTTCATCATCATGACTCTGCGGCTAAGTCATACTGTTCTGCTACTTGTGTGTCTTTCTTTGCATGTCTTTGTCAAAGATGGCTGTGCAAGTGTTGCCGGCCTTCATCCTTGCCTCTGGACCCAGTGTGACTGCCTACTTACTGGGCAACACGACTGGTATCACCGTGAGCCTGAGCGCTGTGACACAATCCAACACAACTGGCACGATTTCTTCCCCTTCCTGTACAGCCAGTAATACTAGCCAGTGGCAGCTTATACAAGAGACTGTTGGAAAGaatgcattgaAAGTGACGCTGCACTTGAATCGAAGCCTGCTGCTGTGTGGCAGCACTGATCAGACAGATTGCTGTGCAGCGGCGGTGCTACTGCCGTGCGTGGTGGAAGCCCTCCAGGTGTCAGCCTGCCTGGACAACAATTCTCAGGCCACCTTACTGGTGCAGGCTGAGATCTATGCCCAGATCCCCTCCAATGGAACTGTGTCTGAGGTGAAAACTGTGATTCCCAACCAGGCCTACCAGCCTCTTGGCCCATGCCCCTGTAACCTAACAGCTGGGGCCTGTGATATCCGCTGCTGCTGTGACCAGGAGTGTACACCGGAATTGGTGCGGCTGTTTGAGTCCCAGTGCTTCAGTGGGGTGTTTGGGGGGAATGTCTCGCCTCCCTTCGACCAGCAGTGCTCCGTTCAGGCAGCCAACAACGCTCCTGACTGGTTTCCATTTCTGTGTGTGCAATCGCCTGCTGCCAACAGCCCCTTCCTGGGGCTCTTCTACCAGGGAGCCACGGTCAATCCCAAGACCAGTCCTTCCTTCGAGACTCCATCTTTATCTGTGCCATTACCTCCTAATGGTTACAAACAAGGGGATCCCATTTTCATAGTGGGTAATCGGTATTTCACAATCCCACAGCAATCCCTGGTGGGTCAGTGCATACAGAAAGCTCCCGTGGCCtacctgcaggatttccagtcCAGCTGTGCAGTTCCTCTGACTAACTGTGGGAGCAGCCCAAGCCTGTGCATAAGTGCTTCTGATTTAAGTGTCAACATTCACAATGGATTTGACAGTAGCATTACCATCAGTGTGAGGGAGGAGATCTCCAGCGACCCGAGTGCTTTTGTTTCTAACCCTAAGGAAGTTCAAACACTTAGCTCTACACAGACTTCTCTGTTCCCAGGAGGCGAACCCAGTTCAAATTCAGGGAACCTTTTTGCAGGACAAAGCAGCATATGTGAAAATGTGACTTTATCCCTCAAGTACACTTTTCACTGGAACGGGAACAACCTCACAAACGTCTCAGTGACCCAGACCATTGGACGGGTGTGCTGGGACGCAGGCGCCACATTGACCCAGAGGTTTGCAGCAGTTTTTATTAATGGAAATGGAGCAGCACTGGCAAACTCAGGCAATCCAGGTTATCAGATCGGAAAACCCGTTATTGCTGGAAATGGACTCATGGAGATAAACAGGACATTCATAAATTTGTGGCAGCCAgTTGGGAATGGTCTTTGTGCTTCAGCCAAAACAACCCCAGTTTTGTTTGGGGAGGATTCATCCACAGGCTGCTTCTTACGACTTAATCTCCAGGATCTGTCGAACTGCAGTCAGCTCAGAGAAATGGTTCACAGTGGCTTGGCTGCTCTCGTGAATGCAACTTTAGTAGCAAAAAAAGGCAACTCCAAAGTGTTGAACCAGACAGATTGGGTGCATACAAAGTATGTGCCACCAAATATTACCAGCACCATAGAAGGTCAGCCTGGGACCTGTGCTGATGTCCCTTCTCATCTGAACATCCGGATAAACACCTCTGTGGTAGGGGTCGTGGGAGGGGTGCCTCAGCAGGAAATACAGGCTGTGGAAGTGACTTTTGGTGTGGTCACATGGCAGATCCAGTGTGGAGGGGGTGACCCGGCTGCTTGTGTGAACAGCACTGTGGTTCAGTCATTTCCCGTCAGTGCCTCAGTGACCTTCGTTGCTATCCCTGCCCAGCCCCTGACTCCAAAAACCAGGTTTCAGATCAATTACACAGAATACGACTGCGATAGGAACGATGTCTGCTGGCCCCAGCTGGCATTCCCACTGACTAGATACTACACAGGTGAGCCCTACTCCCAGTCTCTTGCGAAAGGAATGATCCTGATATTTTTCTTCATAGTGGCATCTGTGCTTGGAACTCCGTGGAATCAAATCCGACAAGCATggaataacttgttttaaagtCCACTTAACTGCAATAAAACTGTGGTATtc

Function

GO: NA

KEGG:

id description
K19361 TCTN2; tectonic-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148752 lncRNA upstream 10578 20684865 ~ 20687644 (+) False AMCG00018800
TU148666 lncRNA upstream 77675 20607648 ~ 20620547 (+) True G118644
TU148668 lncRNA upstream 92125 20604704 ~ 20606097 (+) True G118645
TU148662 lncRNA upstream 97866 20599791 ~ 20600356 (+) True G118641
TU148661 lncRNA upstream 100104 20597875 ~ 20598118 (+) True G118640
TU148823 lncRNA downstream 216415 20922368 ~ 20931404 (+) True G118771
TU148961 lncRNA downstream 664957 21370910 ~ 21422770 (+) True G118863
TU149002 lncRNA downstream 975367 21681320 ~ 21681723 (+) True G118885
TU149036 lncRNA downstream 1142462 21848415 ~ 21853057 (+) False AMCG00018820
TU149148 lncRNA downstream 1841319 22547272 ~ 22547691 (+) True G118999
AMCG00018804 mRNA upstream 330 20695682 ~ 20697892 (+) True AMCG00018804
AMCG00018800 mRNA upstream 3028 20679280 ~ 20695194 (+) True AMCG00018800
AMCG00018799 mRNA upstream 19401 20670836 ~ 20678821 (+) True AMCG00018799
AMCG00018791 mRNA upstream 52981 20642329 ~ 20645241 (+) True AMCG00018791
AMCG00018793 mRNA upstream 60518 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018801 mRNA downstream 544 20706497 ~ 20723114 (+) True AMCG00018801
AMCG00018802 mRNA downstream 17657 20723610 ~ 20772586 (+) True AMCG00018802
AMCG00018806 mRNA downstream 190961 20896914 ~ 20912077 (+) True AMCG00018806
AMCG00018823 mRNA downstream 985358 21691311 ~ 21692108 (+) True AMCG00018823
AMCG00018821 mRNA downstream 1009897 21715850 ~ 21743739 (+) True AMCG00018821
TU148663 other upstream 94907 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 104083 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 105206 20592736 ~ 20593016 (+) True G118635
TU148644 other upstream 183731 20514160 ~ 20514491 (+) True G118623
TU148611 other upstream 323410 20373996 ~ 20374812 (+) False AMCG00018781
TU148789 other downstream 49676 20755629 ~ 20756220 (+) False AMCG00018802
TU148883 other downstream 482003 21187956 ~ 21189246 (+) True G118815
TU149795 other downstream 4528129 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 4778344 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 5754667 26460620 ~ 26461227 (+) True G119762

Expression Profile