RNA id: AMCG00018810


Basic Information

Item Value
RNA id AMCG00018810
length 1768
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00018810
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21142055 ~ 21146883 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCGGACACGGGTGGCGCTGTCCTCACACTCGGCAGCCCGATATCGTGAGAGCGAGATTTTCATCTCATTTCAAGATGGCGCCGTCCAGGGACAGCAACGCGAGGCCGGACACCTCCAAACAAGACTCGGGCAAAAAGTCGTTTAAGAAAGACATAAAGAGCAAAGCAGAGCAGGTTCTTGGGAACAGAAAACATGCGAACGACGTCTTTGATATTTTGGAGTATCTACAGGCAGATAAAGAGGAAGCCGTTGTGTGCGCCGTCAAtgcttgtaataaaatgttctgCGCCTTGTTAGAAAGAGGTGACCTGTTCATCGGGCCGCTGCCGAAGGAAGATCGGATACTTACAGACAATTACAGCGCAGAGGACAAGTACAAGATGTGGATGAGGCATCGCTACGCCAGCTGTGTGCAACAAACGCTGGATCTCATCGCCCATGAGGCCTTCCAGGTCAAAGAAAGTGCTCTCTGTGCCCTGATGGCGTTTGTGGAGATGGAAGGGAGGTTTCCTCTGGTGGTAGTGGACTGGGACGAGCACTACAACTTCCCTCGGGAGCTTTTAAAGTCTGTGGTGGAGAAGCTCTTATCCGTGGACGAGGACATGTCTCTCCTGATCTCCAGGTTTCAGGAGTTCCTGGACTTTGAGGATGTGCGGTTCTATGTGATGGGATTCATCATCGATAATGTGGCTAAAGTCATGGATAGAAAAAAAGAGGCTGTGTTACCAGTGTATCAGAATAATGTTTTCACCCTGCTGTCGAATATCAGCGTCCCTAGTCAAGAGGCAGATTTGACCAATTTCATGGTAAAGCAGGAAGCTAAACACGAAGACTGGAAAGCAGCTAAACTGAAAGAGCACAGGCGTGTATTTGATCGTGTGTGGCTCGGCTTTCTAAAATACAAGTTGCCGAGCAACATGTATAAGAAGGTCCTGGTCATTTTCCACGACTCCATTCTGCCACACATGAGCAAGCCCACCCTGATGATTGATTTTCTCACAGCGGCCTACGACATCGgcGGAGCAATTAGCCTTTTGGCTTTGAATGGCCTGTTTGTCCTCATTCACCAGCACAATCTAGACTACCCGGATTTCTACAAGAAACTGTACAATCTGTTGGAGCCCTCCATATTTCACGTCAAGTACAGGGCCCGTTTCTTCCATCTGGCCGATCTCTTCCTGTCCTCTAGCCATCTCCCCGTCTATCTGGTTGCGGCCTTTGCCAAACGGTTGTCCCGGCTGGCTCTGACGGCTCCCCCGCCCGCCCTGCGCATGCTCATCCCCTTCATCTGCAACCTGATTCGCCGGCACCCCAGCTGTCGTGTCCTCATCCACCGGCCCAGTGCCGCTGACGTGCCTCGTGAAGACCCCTACATCATGGAAGAGGAGGACCCAGCGCAGTGCCACGCTCTGGAGAGCAGCCTGTGGGAGCTGCAGGCCCTGCAGAAACACTACCACCCAGATGTCGCGAAAGCTGCCTCTTCGATCAACAAGACATTGCCCGAGCAGGAGGACAATATCAGTGACCTGCTGGAGGTCTCCACATATGAGATGTTTGAAAAGGAGTTGAAGAGCAAGTGGCAGTCTGTGCCTCTGGAGTTTGAGCCGGCCAAGGGGCTGCTGGGAAGACCTGGAGAGATCTTGGGCCAGCACTTTGCATTAGAATAGACAGTATTGTTTTGGAGCCTGCGATTTGGAACAATATcgttctgttttagttttttgtttttttgtataaaagcaatacattcaaTGCACGTGGTGAAGT

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process

KEGG:

id description
K14771 NOC4, UTP19; U3 small nucleolar RNA-associated protein 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148874 lncRNA downstream 33254 21108570 ~ 21108801 (-) True G118808
TU148783 lncRNA downstream 418274 20723580 ~ 20723781 (-) True G118735
TU148774 lncRNA downstream 444228 20696834 ~ 20697827 (-) True G118727
TU148771 lncRNA downstream 445867 20695669 ~ 20696188 (-) True G118726
TU148764 lncRNA downstream 458096 20683666 ~ 20683959 (-) False AMCG00018805
TU148977 lncRNA upstream 420126 21567009 ~ 21567253 (-) True G118870
TU148992 lncRNA upstream 448111 21594994 ~ 21616493 (-) True G118881
TU149003 lncRNA upstream 534450 21681333 ~ 21681557 (-) True G118886
TU149006 lncRNA upstream 548100 21694983 ~ 21702048 (-) False G118889
TU149007 lncRNA upstream 548100 21694983 ~ 21702048 (-) False G118889
AMCG00018807 mRNA downstream 129364 20922373 ~ 21012691 (-) True AMCG00018807
AMCG00018808 mRNA downstream 336729 20776919 ~ 20805326 (-) True AMCG00018808
AMCG00018805 mRNA downstream 452133 20683686 ~ 20689922 (-) True AMCG00018805
AMCG00018797 mRNA downstream 479813 20645214 ~ 20662242 (-) True AMCG00018797
AMCG00018798 mRNA downstream 500179 20637710 ~ 20641876 (-) True AMCG00018798
AMCG00018809 mRNA upstream 1649 21148532 ~ 21175765 (-) True AMCG00018809
AMCG00018811 mRNA upstream 29949 21176832 ~ 21180489 (-) True AMCG00018811
AMCG00018813 mRNA upstream 39498 21186381 ~ 21190099 (-) True AMCG00018813
AMCG00018812 mRNA upstream 46064 21192947 ~ 21228267 (-) True AMCG00018812
AMCG00018816 mRNA upstream 93024 21239907 ~ 21266410 (-) True AMCG00018816
TU148773 other downstream 444228 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 536235 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 536235 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 651317 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 684532 20444497 ~ 20457523 (-) False AMCG00018788
TU149076 other upstream 933581 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 1657462 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 3928515 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 3987888 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 4039324 25186207 ~ 25187408 (-) True G119545

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) LOC110509337 True 1267 mRNA 0.52 10 NC_048593.1 17395850 ~ 17399424 (+)