RNA id: AMCG00018815


Basic Information

Item Value
RNA id AMCG00018815
length 1566
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00018815
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21401894 ~ 21422652 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACCGCCGCGGAGCGAGTAAGAAGGAGCACAAGGCCTCGAAGGAGGAGAGCGACAGCAGTAAATATGCCGAGCTGCTGGTGTTCGGCTATGCCTGCAAGGTGTTCCGGGACGATGAGAGGGCTCACTTCCACGAACAGGGCACACATCTTATCCCATGGATGGGGGACAAGAACATCATGATTGATAGGTACGATGGGCGCGGTCATTTGCATGACCTGTCGGAGTACGATGCAGAGTCCTGGAATCGAGACTACAAGCTGTCCGAGGAGGAGGCCAGGATTGAGACTCTGTGTGACGAGGAGAGGTATTTAGCCTTGCATACGGACTTGCTTGAGGAAGAGGCGAGGCAAGAGGAGGAGTACAAGCGTCTGAGTGAGGCCTTGGCTGATGAGGGCACCTATAACGCAGTGGGCTTTCGCTACAGTGCCGATTACTATGATCCCTCACAGCCAACAGAAGAGGAGGAATCGTCTAAAGAAATGGCTGAGCAAGAACCCCAGGAGAGCGAGGAGCCTTTTGTCGCTCCCCCCGGCCTCGCTGTGCCCCCCGATGTGGAACTGCCTGCAACAACGAAGATGCATGCCATCATCGAGCGCACAGCCAGCTTCGTCTGCAAGCAAGGGGCCCAGTTTGAGATCATGCTGAAAGCAAAGCAGTCGAGGAATTCCCAGTTCGATTTCTTGCGCTTTGATCATTACTTGAACCCTTACTACAAACACATCCTCAAGGCCATGAAGGAGGGCAGGTACACCAAAGTCTCAGAGGCCAAACCAGAGGACAAGGACAGTAAGTGGAGCTTCTTCATGATCTGTTCCGGGTCTGAAGATTCGGATGATGACGTGGATGGAGGGTATCTTCATCCCAGTCTGTGTGCTTTCAAAAAGAGTAACAGACTAGAAGAAATCATGAAGCCTTTACAAGTAATGGATCCAGATCACCCTCTGGCAGCATTGGTCCGTAAAGCCCAGCTAGACAACAGTGCTGCAGCCAAGAAGGCTGAAGAGAGCGCGCTGGCAGCAGGGGCCCTCCGTGCTGCAGCCACCGCGGCCCCCGCAGAATTCCCCAGCGACTCAACGGTCGCTGCAATGTATTATGGGTACTACATGCTGCCGGATGGGACCTACTGTTTCGCCCCTCCTCCCCCAGGGATAGACGCCAACGCCTACTACAACTCCTTACCCTCTGGGATTTTACCCACATCCTCTGGAGCCGctgcccccctgccccctggGACGACTCCCCCACCGCCTCCAGAATCTGCCAATAGCCCCAGCAGTCAAGCGTCTGCTCCAGCacccactactactactactactactactactacaagTTCCCAATCCCAAGCTCCTGTTGCCGCTATCATTCCTCCGCCCCCAGACATCCAGCCGGTCATCGACAAGCTTGCCGAGTATGTCGCCAGGAATGGAATCAAATTTGAGACCAGTGTCCGTGCCAAGAAGGATCCGAGGTTTGACTTCCTGCAGTCCTGGCACCAGTACAATCCGTACtatgaatttaaaaagcagTATTTTGCGCAGAAAGAAGGATGCAGTCTGGCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148874 lncRNA downstream 293093 21108570 ~ 21108801 (-) True G118808
TU148783 lncRNA downstream 678113 20723580 ~ 20723781 (-) True G118735
TU148774 lncRNA downstream 704067 20696834 ~ 20697827 (-) True G118727
TU148771 lncRNA downstream 705706 20695669 ~ 20696188 (-) True G118726
TU148764 lncRNA downstream 717935 20683666 ~ 20683959 (-) False AMCG00018805
TU148977 lncRNA upstream 144357 21567009 ~ 21567253 (-) True G118870
TU148992 lncRNA upstream 172342 21594994 ~ 21616493 (-) True G118881
TU149003 lncRNA upstream 258681 21681333 ~ 21681557 (-) True G118886
TU149006 lncRNA upstream 272331 21694983 ~ 21702048 (-) False G118889
TU149007 lncRNA upstream 272331 21694983 ~ 21702048 (-) False G118889
AMCG00018816 mRNA downstream 135484 21239907 ~ 21266410 (-) True AMCG00018816
AMCG00018812 mRNA downstream 173627 21192947 ~ 21228267 (-) True AMCG00018812
AMCG00018813 mRNA downstream 211795 21186381 ~ 21190099 (-) True AMCG00018813
AMCG00018811 mRNA downstream 221405 21176832 ~ 21180489 (-) True AMCG00018811
AMCG00018809 mRNA downstream 226129 21148532 ~ 21175765 (-) True AMCG00018809
AMCG00018819 mRNA upstream 174817 21597469 ~ 21600672 (-) True AMCG00018819
AMCG00018814 mRNA upstream 189298 21611950 ~ 21623551 (-) True AMCG00018814
AMCG00018817 mRNA upstream 226182 21648834 ~ 21666684 (-) True AMCG00018817
AMCG00018818 mRNA upstream 249622 21672274 ~ 21675196 (-) True AMCG00018818
AMCG00018822 mRNA upstream 475154 21897806 ~ 21909489 (-) True AMCG00018822
TU148773 other downstream 704067 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 796074 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 796074 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 911156 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 944371 20444497 ~ 20457523 (-) False AMCG00018788
TU149076 other upstream 657812 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 1381693 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 3652746 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 3712119 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 3763555 25186207 ~ 25187408 (-) True G119545

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038374 False 3660 mRNA 0.51 18 NC_007132.7 15125497 ~ 15282452 (-)
grasscarp (Ctenopharyngodon idella) CI01000006_10518326_10566504.mRNA True 1929 mRNA 0.54 12 CI01000006 10518326 ~ 10566504 (+)