RNA id: AMCG00018816


Basic Information

Item Value
RNA id AMCG00018816
length 1695
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00018816
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21239907 ~ 21266410 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCTCTTCTTTCTTGATCCGTACTGTGATTGTGGAAAAGGATGACTGGCTGAGTAAATTCGGCTACCTCCCACCACCAGACCCAGTCACAGGGCAGCTGCAGACCAAGGAGGCTCTGACCAATGCCATCAAAGCAATGCAGAAGTTTGGAGGTCTGGAGGAGACAGGAGTTTTggACGAAGCCACACTGGGGCTGATGAAAACGCCGCGTTGCTCTCTGCCCGATGTCACTGAGTCAGAGACCAGCTCCGGGAGGCGGAGACGCGGCGCGCCCACCCAAACCAAGTGGAACAAGAGGCATCTGTCCTGGAGGGTCCGGACGTTCCCAAAAGAGTCCCACCTCCTGGGACATGATACGGTCCGCGCCCTGATGTACTACGCCCTGAAAGTGTGGAGCGACATCGCGCCGCTCAACTTCCACGAGGTGGCCGGCAACGAGGCGGACATTCAGATCGACTTCACCAAAGCCGACCACAACGACGGATACCCCTTTGATGGGCCGGGGGGTACCGTGGCCCATGCCTTCTTCCCTGGGGATCGCTACACTGCTGGGGACACACACTTCGACGACGACGAGTCATGGACCTTCCGCTCCCCAGACTCCCATGGGATGGACCTGTTTGCAGTGGCGGTCCATGAGTTCGGTCATGCTATTGGGCTGGCCCACACCTCCGCTGTGGAGTCCATCATGAGGCCGTACTATCAGGGCCCCGTCGGAGACCCGCTCAAGTACGACCTGCCGTACGAAGACAAAGTGCGCGTCTGGCAACTCTACGGTGTGAGAGACTCTGTGTCACATACAGTGCGTCCAGATGTGGACAGGACAGCTGACCCTCCTGTCCTACTGGACCTCCCCGAGAACAGATCTACTGTCCCGCCAGCTCGGGACGCCCCCGACAGGTGCAACACTCATTTCGACGCAGTGGCTCAGATTCGAGGAGAGGCGTTCTTCTTCAAAGGAAAGTATTTTTGGAGACTGACCCGAGAGAAGCACCTTGTCTCGCTGCGACCTGCACAGATCCATCGTTTCTGGAGGGGCCTGCCAATTAGTATGGACAGTGTGGATGCTGTCTACGAGAGACCGGGGGACCAcaagattgtatttttcaaagGGGAGAAGTACTGGGTGTTTAAGGACAACAACGTGGAGGAGGGATACCCTCGGCCCATCACTGACTTCGGGCTGCCTCTGGAGGGGGTGGACGCAGCGTTTGTCTGGGCACACAACGACAAGACGTACTTTTTCAAGGACAGCCGCTACTGGAGGTACGACGATCACCTGCGGAGGATGGATCTAGGGTACCCCAAGGACACCATGCTGTGGAAGGGAGTCCCACCATTTCTCGATGACGCCATGCGGTGGTCCGACGGCGCCTCGTACTTCTTCAAAGGGAAGGACTACTGGCGGGTGCTGGGCAGCGACATGGAGGTGGAGGCGGGCTACCCTCGCTCCATCGGCAAGGACTGGCTGGTGTGCACGGAGATGCAGTCGGACTCTCCAGCGCTGGAGAGCAACGGCACGGCCACCCGCTCACAGGGCCAGCACCACGTGAGCCACGCGGAGAACGGCTACGAGGTCTGCTCCTGCACCTCGGCCTCGCCGGCCCCTGTGGCCCCCTCTCGGACGCTCTCTGGAGCTCTCTGTTCACTCTGCCTCTGGACCCTCACAGCTGCCCTCTCTGCACCGCTATGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K07997 MMP17; matrix metalloproteinase-17 (membrane-inserted)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148874 lncRNA downstream 131106 21108570 ~ 21108801 (-) True G118808
TU148783 lncRNA downstream 516126 20723580 ~ 20723781 (-) True G118735
TU148774 lncRNA downstream 542080 20696834 ~ 20697827 (-) True G118727
TU148771 lncRNA downstream 543719 20695669 ~ 20696188 (-) True G118726
TU148764 lncRNA downstream 555948 20683666 ~ 20683959 (-) False AMCG00018805
TU148977 lncRNA upstream 300599 21567009 ~ 21567253 (-) True G118870
TU148992 lncRNA upstream 328584 21594994 ~ 21616493 (-) True G118881
TU149003 lncRNA upstream 414923 21681333 ~ 21681557 (-) True G118886
TU149006 lncRNA upstream 428573 21694983 ~ 21702048 (-) False G118889
TU149007 lncRNA upstream 428573 21694983 ~ 21702048 (-) False G118889
AMCG00018812 mRNA downstream 11640 21192947 ~ 21228267 (-) True AMCG00018812
AMCG00018813 mRNA downstream 49808 21186381 ~ 21190099 (-) True AMCG00018813
AMCG00018811 mRNA downstream 59418 21176832 ~ 21180489 (-) True AMCG00018811
AMCG00018809 mRNA downstream 64142 21148532 ~ 21175765 (-) True AMCG00018809
AMCG00018810 mRNA downstream 93024 21142055 ~ 21146883 (-) True AMCG00018810
AMCG00018815 mRNA upstream 135484 21401894 ~ 21422652 (-) True AMCG00018815
AMCG00018819 mRNA upstream 331059 21597469 ~ 21600672 (-) True AMCG00018819
AMCG00018814 mRNA upstream 345540 21611950 ~ 21623551 (-) True AMCG00018814
AMCG00018817 mRNA upstream 382424 21648834 ~ 21666684 (-) True AMCG00018817
AMCG00018818 mRNA upstream 405864 21672274 ~ 21675196 (-) True AMCG00018818
TU148773 other downstream 542080 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 634087 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 634087 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 749169 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 782384 20444497 ~ 20457523 (-) False AMCG00018788
TU149076 other upstream 814054 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 1537935 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 3808988 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 3868361 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 3919797 25186207 ~ 25187408 (-) True G119545

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038372 False 1653 mRNA 0.54 9 NC_007132.7 14892050 ~ 14966718 (-)
grasscarp (Ctenopharyngodon idella) CI01000006_10707037_10743311.mRNA True 2614 mRNA 0.50 16 CI01000006 10706944 ~ 10743594 (+)