RNA id: AMCG00018819


Basic Information

Item Value
RNA id AMCG00018819
length 486
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00018819
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21597469 ~ 21600672 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGTGCCCTGCAGCCGTCACAGAACTGCTGGTGCTGATTTCAAGAATCCTGTCCGTCTCACAAACTTTCTGCTTTGTTATATTATCTTTCAGGCTGACGGCCAAAGCTGTTGCTGTCCTCTTGCCAATCCTGGGGATCTCGTGGATTTTCGGGGTCCTGGCTGTACATGCAGCCAtgcttcatttttcatttcccagCGCTGCTGTCTTCCTAACCAGGGAAGACAGTGCCATGATTTGGTGCCAGATTGCGAAATGTATTCAGCGTggCTTCTTCATTTTCCTCTTCCACTGCCTTCTTAACTCCGAGGTCCGAGCTGcctttaaacacaaaaccaagGTTTGGTCTCTTACCAGTAGCTCCATCCGTAACATCAACGTGAAACCTTTCAACTCTGACATTGTAAatgAATGGAAACAGGCCTGGAACGACACcaacaaaaatgaacacatgGGACAAGAGTACAAACTCAGCAAACCGCATTGA

Function

GO:

id name namespace
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148977 lncRNA downstream 30216 21567009 ~ 21567253 (-) True G118870
TU148874 lncRNA downstream 488668 21108570 ~ 21108801 (-) True G118808
TU148783 lncRNA downstream 873688 20723580 ~ 20723781 (-) True G118735
TU148774 lncRNA downstream 899642 20696834 ~ 20697827 (-) True G118727
TU148771 lncRNA downstream 901281 20695669 ~ 20696188 (-) True G118726
TU149003 lncRNA upstream 80661 21681333 ~ 21681557 (-) True G118886
TU149006 lncRNA upstream 94311 21694983 ~ 21702048 (-) False G118889
TU149007 lncRNA upstream 94311 21694983 ~ 21702048 (-) False G118889
TU149008 lncRNA upstream 94311 21694983 ~ 21702048 (-) True G118889
TU149009 lncRNA upstream 94311 21694983 ~ 21702048 (-) False G118889
AMCG00018815 mRNA downstream 174817 21401894 ~ 21422652 (-) True AMCG00018815
AMCG00018816 mRNA downstream 331059 21239907 ~ 21266410 (-) True AMCG00018816
AMCG00018812 mRNA downstream 369202 21192947 ~ 21228267 (-) True AMCG00018812
AMCG00018813 mRNA downstream 407370 21186381 ~ 21190099 (-) True AMCG00018813
AMCG00018811 mRNA downstream 416980 21176832 ~ 21180489 (-) True AMCG00018811
AMCG00018814 mRNA upstream 11278 21611950 ~ 21623551 (-) True AMCG00018814
AMCG00018817 mRNA upstream 48162 21648834 ~ 21666684 (-) True AMCG00018817
AMCG00018818 mRNA upstream 71602 21672274 ~ 21675196 (-) True AMCG00018818
AMCG00018822 mRNA upstream 297134 21897806 ~ 21909489 (-) True AMCG00018822
AMCG00018824 mRNA upstream 352562 21953234 ~ 21954948 (-) True AMCG00018824
TU148773 other downstream 899642 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 991649 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 991649 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 1106731 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 1139946 20444497 ~ 20457523 (-) False AMCG00018788
TU149076 other upstream 479792 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 1203673 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 3474726 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 3534099 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 3585535 25186207 ~ 25187408 (-) True G119545

Expression Profile