RNA id: AMCG00018822


Basic Information

Item Value
RNA id AMCG00018822
length 3179
RNA type mRNA
GC content 0.49
exon number 20
gene id AMCG00018822
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21897806 ~ 21909489 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATACACACAATACAACTCGGAAAGCCTAACAATTGAATGAACTTCAAATTATTCGTGCGTGATTATCTGGAGCGTGAGGAGGTGGGGCATGTACAGTGAAGAATAATTTAAcgacatttattttgtcaTCAAGATGACTGGAAGAGCAAGAGCCCGTTCGAGGGGAAGAGCTCGTGGACAGGAAGCTAGTGTTCCAGGACCGgCTCCAGTGTCTTCAGCGGAGGCCAGGCCAGTCCCGCCAGCTGCAGAAGGGGAGCTGGTGGGCCGTGGAAGACAGAAAGGCGTACCTGGGGCAGTCAGATCTGAAAGTGCAATTCTTCAGATTTCTGCTGGCTTTCATCAAGTGAAGATTGGAGAGCGAGGGGGACGTCGTCGAGACTTCCATGATGTGGGGATCAATACCAGGGGAGCCATGGAACACGTGAAGGAGTCAAAAACAGGTGTGTCGGGTTCTGCGATTGAGCTGAGAGCCAATTATTTCCGAATCCTGTCCCGGCCCCAGTGGGTTTTGTATCAGTACCATGTGGACTACAACCCGCCAATGGAGTCACGCCGCCTGCGGTCTGCCCTCTTGTACATGCATGACGAGACTCTGGGCTCCACTCGCTCCTTCGATGGAGCCATATTGTTCCTGCCACATAGACTGCCAAACGTGGAGACAGTCTTGTTCAGTGAGACACggcaaggaaataaaatcaagatTACAATAACCCTGACAAATGAACTGCCTCCCACCTCCCCAGTGTGCCTTCAGTtctacaatattattttcagaaggaTTCTGAGGATGTTGAACATGCAGCAGATTGGACGCCATTACTACAACCCAAATGATCCCCTGAATATCCCCCAGCACAGGCTGATGATTTGGCCTGGGTTCACCACCTCAATTCTGCAGTACGAACGGAGCATCATGCTTTGCACTGACGTGAGCCACAAGGTGCTGCGCAGCGAGACGGTGCTGAGCTTCATGTCTCAGCTGAGGCAGCAGGCTGGAGACCAGCGCTTTCCTGAGGCTTGCACCAAAGAGCTGGTGGGCCTGATTGTCCTCACTAGgtacaacaacaaaacatacaggATCGATGACATTGCTTGGGATCAGACTCCGAACAACACTTTCACAAGACGGGATTCAGAAATTTCCTTCAAGGACTACTACAAGACTCAATATAATTTGGAAATCACTGATGGTAATCAACCACTTCTGGTCAGTCGCATCAAGAGAATGGGTCCTTCCGGCGCCCCTCCCCCTGGCCCCGCCATGCTGGTGCCCGAGTTCTGTTATCTCACAGGTCTGACGGACAAGATGCGCAGCGACTTCCACATCATGAAAGACCTGTCGACGCACACGAGACTCACCCCAGAGCAGAGGGAGCAGCGCCTGAGCCGCTTCATCACCAACATCCACAGGCATGCGATTATTTCAAGTGTGGATTTGGTCAATACCAACACACAGGCAGAACTGAACAGCTGGGGCCTCAACTTTGACAACAAGCTCCTGACTATTCAGTCCAGAGTCCTTCCTGCAGAAAGGATCTCCCAGGGACCGAGGACTTATGACTACAACCCGTGGGTGGCAGATTGGTCAAAGGAGATGAGGGGAGCTCCGCTGATCAGCAGCAGACCACTGGATGAATGGATAATGCTGTACACCCGTCGCAATGCTGACAGTGCTCAAGCACTGTTGCAGAATCTGCACCGGGTGTCCCAGCCGCTAGGAATCCGCATGCAGAGAGCGGCCATGATCGAAGTTGAGGATCGACAGGAATCCCTGCTGAGGGCCTTGCAGCAAAATGTCGGTCCGAATACTCAGATGGTGGTCTGCATTCTTCCGACCAACCGCAAGGACAAGTATGACTGTGTGAAGAAGTTCCTGTGTGTGGACTGCCCCACGCCCAGCCAGTGTGTGGTGGCGCGCACCTTGAGCAAACCACAGGCGCTCATGACCATCGCCACCAAAATTGCCCTGCAGATGAATTGTAAAATGGGGGGTGAGCTCTGGGCTGTGGACATACCACTAAAGCAGCTCATGATTGTGGGGATCGATTGTTATCACGACACCTCTGCCGGGAAGAGATCCATCGGAGGGCTGGTGGCGAGTCTCAATGGCAAAATGACCAGGCAGGCGTGGATGAAGTACAATGACGCCTTGCCGACCCGTATCATCGTGTACCGAGACGGCGTCGGTGACGGGCAGCTGCAGAGTGTGGTCAGCTATGAGGTGCCACAGATCCTGGACTGCATCAAAGCACTGGGACAGGATTACAACCCCAAACTCACCGTCGTCGTTGTGAAGAAGCGCATCAGTTCGAGGTTTTTTGCCCGAGTTAGTGGAAAGCTGTCCAATCCACCCCCTGGAACGGTCATCGACACGGAGGTCACTCGACCTGAATGGTATGACTTCTTCATTGTGAGCCAAGCTGTGCGACTCGGCAGCGTCTCCCCAACGCACTACAACGTGGTGTACGACAGCAGCGGCTTAAAACCAGACTACATGCAACGCCTCACATACAAGCTGTGTCACATGTACTACAACTGGCAGGGAATAATCCGAGTGCCGGCCCCCTGCCAGTACGCTCACAAACTGGCCTTCCTGGTGGGTCAGAGCATTCACAAGGAGCCCCACACCAACCTGGACGACTTCCTCTATTACCTGTAACTGACAGAAGGTGTACAGCTCAAATGCCCGAGGATAGGAAGTCCAGACAAATTGGCACTAAAATTGgatacatttcagattaaacgTGGTTGAAGCCAAGCATGTTTAACATCTGAACGTTGcttatttttcagttcagtGAGGATTTTCGTATGAAAATCAgttaacattttgttatttgatgatggtttattattattattattattattaattagtacTCTGCAGGAAAACCGAGAGAAACACCTGCATTTTTCAGTTGATTTGAATTGGCTTTTGAAAGGTTTATatagcagttaaaaaaaaaaaaaaaaaacctttgaagCACTTACTCTTCACAATCAATAACATTGCCAGTTATctgatgtgaaatgtttttttgaatgTGTGCACTTATACTGTTCAGGTATGTTCTGAATTTAAAACCTGTTGATTGTTCTGCAACATggaagtaaaaaacaaaaccattaccTTTGCTTCATAATTTGGAAGGGTTGGCAATAAAAGGTCATCATTAAA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0007281 germ cell development biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0043186 P granule cellular_component
GO:0005515 protein binding molecular_function
GO:0034584 piRNA binding molecular_function

KEGG:

id description
K02156 AUB, PIWI; aubergine

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149015 lncRNA downstream 179003 21703302 ~ 21718803 (-) True G118892
TU149006 lncRNA downstream 195758 21694983 ~ 21702048 (-) False G118889
TU149007 lncRNA downstream 195758 21694983 ~ 21702048 (-) False G118889
TU149008 lncRNA downstream 195758 21694983 ~ 21702048 (-) True G118889
TU149009 lncRNA downstream 195758 21694983 ~ 21702048 (-) False G118889
TU149088 lncRNA upstream 241865 22151354 ~ 22153714 (-) True G118947
TU149209 lncRNA upstream 718056 22627545 ~ 22630125 (-) True G119048
TU149241 lncRNA upstream 754344 22663833 ~ 22664099 (-) True G119070
TU149243 lncRNA upstream 757440 22666929 ~ 22667210 (-) True G119072
TU149317 lncRNA upstream 852871 22762360 ~ 22766026 (-) True G119128
AMCG00018818 mRNA downstream 222610 21672274 ~ 21675196 (-) True AMCG00018818
AMCG00018817 mRNA downstream 231122 21648834 ~ 21666684 (-) True AMCG00018817
AMCG00018814 mRNA downstream 274255 21611950 ~ 21623551 (-) True AMCG00018814
AMCG00018819 mRNA downstream 297134 21597469 ~ 21600672 (-) True AMCG00018819
AMCG00018815 mRNA downstream 475154 21401894 ~ 21422652 (-) True AMCG00018815
AMCG00018824 mRNA upstream 43745 21953234 ~ 21954948 (-) True AMCG00018824
AMCG00018830 mRNA upstream 267469 22176958 ~ 22223700 (-) True AMCG00018830
AMCG00018831 mRNA upstream 382492 22291981 ~ 22292847 (-) True AMCG00018831
AMCG00018835 mRNA upstream 513917 22423406 ~ 22438354 (-) True AMCG00018835
AMCG00018840 mRNA upstream 571650 22481139 ~ 22487712 (-) True AMCG00018840
TU148773 other downstream 1199979 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 1291986 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 1291986 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 1407068 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 1440283 20444497 ~ 20457523 (-) False AMCG00018788
TU149076 other upstream 170975 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 894856 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 3165909 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 3225282 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 3276718 25186207 ~ 25187408 (-) True G119545

Expression Profile