RNA id: AMCG00018824


Basic Information

Item Value
RNA id AMCG00018824
length 1623
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00018824
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21953234 ~ 21954948 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTCCCTCTGTCAGCCTGAGTGTTGTCTGCCTTCTCCTTGCCTGCGAGGCTCTGCACTGCTCTGCCATCAGCTCCATTGATCCTGATCGCCCGGCGGAAGGAAGATGCCAGCATATCGTGATTCCCCTATGCAAAGACATTGGCTACAACATGACCAGGATGCCTAACCTGATGGGCCACGAAGACCAGGGCGAAGCTGCCATTAAGCTGCACGAATTTGCTCCCCTCATCGAGTTCGGATGCCACAGCCACCTGAAATTCTTCCTCTGTTCCCTGTATGCTCCGATGTGCACGGAGCAAGTGTCCACCCCCATCCCAGCCTGCAGGGTGATGTGTGAGCAGGCGAGGCAGAAGTGTTCCCCCATCATGGAGCAGTTCAGCTTCAAATGGCCCGACTCTCTGGACTGCAGCAAGCTCCCCAACAAGAACGACCCCAACTTCCTCTGCATGGAAGCCCCCAACAACGGGTCGGACGAACCCACCAAGGGCTCCAGCACCCAGCCTCCGGAGTTTAGACCACCGAGGCCCAACAGCGGCCAGGATTTCCCGCTCAAAGACACCAGTGACAGGGAGGCTTGTGGCAACCCCGGGAAGTTCCACTATGTGCAGAAGAGTGAATCCTGCGCCCCCAAGTGCTACCCCAAAGTGGATGTCTACTGGAGTCAGGGGGATAAGCAGTTCTCCCTCATTTGGATCGCCATCTGGTCCATCCTGTGCTtcttctccagctccttcacCGTCCTCACCTTTCTTATTGACCCCCAGCGCTTTAAATACCCCGAGAGGCCCATAATCTTCCTCTCCATGTCCTACTGCGTCTATTCAGTGGGGTTTCTCATCCGGCTCTTCGCCGGGGCGGACAACATTGCCTGTGACCGGGACAGTGGGGTTCAGTACGTCATCCAGGAGGGCTTGGAAAGCACTGGCTGCACCATTGTCTTCCTCATTCTGTACTACTTCGGCATGGCTAGCTCCCTGTGGTGGGTGATTTTGACTCTGACTTGGTTTCTGGCAGCCGGCAAGAAATGGGGGCACGAGGCCATTGAAGCCAACAGCAGCTACTTTCACTTAGCTGCCTGGGCCATCCCTGCAGTGAAGACCATCATGATTTTAGTCATGAGGAAAGTGGCAGGGGACGAGCTGACTGGCATCTGCTACGTTGGGAGCATGGATGTCAAAGCCTTGACTGGGTTTGTACTCATCCCCCTCTCCTGCTACCTCATCATCGGGACCTCTTTCCTGCTCTCTGGCTTTGTCGCCCTTTTCCACATCAGGAAGATCATGAAGACCGAGGGGGAGAACACGGACAAGCTGGAGAAACTCATGGTGCGGATCGGGGTGTTCTCCGTCCTGTACACCGTCCCCGCCACCTGCGTCATCGCTTGCTACTTCTACGAAAGGCTCAACATGGATTACTGGAAGGTCCTGGCCAGCGAACAGAAATGTctggagagcagcagcagcagcagcagagttCCAGATGCAGAAGAGTGCCTCATGAAAAACTCCATCCCAGCTGTGGAGATCTTTATGCAGAAAGTTGAGGAAGAGAACAAGAAGAAAGCCTGCCAGTGTATTCACAAGCAGTGGACCTTATATAAAACCTCACCCTCCTCTTAA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0007420 brain development biological_process
GO:0001944 vasculature development biological_process
GO:0090504 epiboly biological_process
GO:0009790 embryo development biological_process
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02842 FZD9_10, CD349_50; frizzled 9/10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149015 lncRNA downstream 234431 21703302 ~ 21718803 (-) True G118892
TU149006 lncRNA downstream 251186 21694983 ~ 21702048 (-) False G118889
TU149088 lncRNA upstream 196406 22151354 ~ 22153714 (-) True G118947
TU149209 lncRNA upstream 672597 22627545 ~ 22630125 (-) True G119048
TU149241 lncRNA upstream 708885 22663833 ~ 22664099 (-) True G119070
TU149243 lncRNA upstream 711981 22666929 ~ 22667210 (-) True G119072
TU149317 lncRNA upstream 807412 22762360 ~ 22766026 (-) True G119128
AMCG00018822 mRNA downstream 43745 21897806 ~ 21909489 (-) True AMCG00018822
AMCG00018818 mRNA downstream 278038 21672274 ~ 21675196 (-) True AMCG00018818
AMCG00018817 mRNA downstream 286550 21648834 ~ 21666684 (-) True AMCG00018817
AMCG00018814 mRNA downstream 329683 21611950 ~ 21623551 (-) True AMCG00018814
AMCG00018819 mRNA downstream 352562 21597469 ~ 21600672 (-) True AMCG00018819
AMCG00018830 mRNA upstream 222010 22176958 ~ 22223700 (-) True AMCG00018830
AMCG00018831 mRNA upstream 337033 22291981 ~ 22292847 (-) True AMCG00018831
AMCG00018835 mRNA upstream 468458 22423406 ~ 22438354 (-) True AMCG00018835
AMCG00018840 mRNA upstream 526191 22481139 ~ 22487712 (-) True AMCG00018840
AMCG00018839 mRNA upstream 543071 22498019 ~ 22537319 (-) True AMCG00018839
TU148773 other downstream 1255407 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 1347414 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 1347414 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 1462496 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 1495711 20444497 ~ 20457523 (-) False AMCG00018788
TU149076 other upstream 125516 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 849397 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 3120450 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 3179823 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 3231259 25186207 ~ 25187408 (-) True G119545

Expression Profile