RNA id: AMCG00018825


Basic Information

Item Value
RNA id AMCG00018825
length 2284
RNA type mRNA
GC content 0.59
exon number 7
gene id AMCG00018825
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22047302 ~ 22074621 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGATGGTACAGAAAGGTGTATCCTTCCATAGTGCAAAGCCCAGCAACTCTCTACTGTGGGAGGCAAACTTGCAGACAGGAGATGAGTGGAAGTACGGGACCACGACAGTCTTCTGCCAGAGAAAGGCCGCCCTGTCGGGAAACAGGCAACTAGACTTTGAAACAGAGGAAttcagcagccaatcagagagcCAGGTGATCAGCTGGCAGCTGGAATACCCTGAATCAACCAAGCCTGGGGACGAGGGGGTCCTGACAGTCTACACCACACAGAGGGACTTTGTGGGCCTGGCTCCCCTGGTCATGGACACCGAGATCTTGAATACGGCCGTGCTGACGGGGAAGAAGGTGGTGGTGCCCGTCAGGGTTGTGGCAGTGGAGGACAACGGCTCGGTGACAGATGTGTCTGACCTGACTGACTGCAGGTCCACAGATGAAGAGGTGCTGAAGGTGTCCGACAGGTGTGACTATGTCTTCGTGAACGGGAAGGAGATGAGGGGGCGGGTGAGGATGGCAGTGAACTTCACCTATGCCTACCTCAGCGCCCAGCTGGAGATGACGGTGTGGATCCCCCGCCTCCCTCTGCAGATAGAGGTGTCTGACACAGAGCTGAGCCAGGTCAAGGGCTGGAGGGTGCCCATCGCCACCAATAAGAGgccCAGCTGGGAcagcgaggaggaggaagacgacCGCAAGGGAAAAGGCTGCATGCTGCAGTTCCAGCACGCTCTGGTGCGGGTGCTCACACACTTTGTGGCGGAGCAGGCAGACCCACGGGAGCAGCTGGCCTACTTCTTAGGCTCAGACTGGCAGGTGGACATCACGGAGCTGGTCAGATACTTCCTGAAGGTGGAGGAGCCGCGGATCGCCAGGCTGCAGGCCGGGAGGGTGTTAGCAGGCCGTGACGTGGGAGTGACTACCATCCAGGTGCTGTCCCCTCTGTCAGACTCGATCCTGGCGGAGAAGACGGTGACGGTGCTGGATGACAAGGTGGCGATCACAGAGCTGGGGGTGCAGCTGGTGACGggtctctcgctctccctccaGCTCAGCCCGGGCAGCAACAGGGCCATCGTTGCCACAACAACCACCCAGGAGCTGCTGCACAGCCCCAAACAGGAGGCTGTCATCAGCTCTTGGATTCAGTTCAGCGACGGCTCGATGACACCGTTGGACATCTATGATTCCACCTACTATGCCCTGACGGTGACTTCGCTGGACGAGGAGATGGTTTCGGTGCAGAGGGACCCCCAGGCTGGCGTCCCGGTGGTGatggcagagggagaggggcagggggcGTTGGTCAAGGTGGAGATGGTGATCAGCGAGGCCTGCCAGAAGTCCAAGCGGAAGAGCATGCTGGCCGTGGGCACCGGAAGCCTCCGGGTCAAATTCCAACCCGGGCCCCGGCGCAACAAAGAGGACAGCAACAACGACTACGGCAACGATGGAGAGGAGCTGGAGAAGAGGGAGCCCAAACAGATGACCCCCAGGCAGGGCATGACGGGCACGGACGGACGTCTCTACGGTAGCTCTATGTCGGACCAGGAGGAAAGCGCAATGAGGAAGATCACCACCACGGTGAAGTCTGTGGTGAGGGATGTGGCCATGGGCAGCATCTCCAGCAGCTCCGGACGTGATCACAGCAACCTGGTGGACTACACGAACTTCCCCTCCCAGGTTGACATCCCCAGGAACAACGGTGCAGTGATGGAGAGCGACCTGGCACAGACCCCAAGGGCGCTGACGGACCTGGAGATCGGCATGTACGCCCTGCTGGGGGTTTTCTGTCTGGCCATCCTGGTCTTCCTGCTGAACTGTGTCTCCTACTTGCTGAAGTTCAGACGCAAGCAGGCCCCAGCGCAGGGCCAGGAGAGCGTGAGCCACATGCACGACTGGGTGTGGCTGGGCACGGACGCCGAGCTGGTGATGAACGTGTCAGGGAGCGCGTCGCAGCATGAGAAACACAAGACCACCGTCATAGACATTGGGCTGGGCCTGGAGAATGGGGCCAACCTGATAGGTGGGCTCTCGCAACAAAGCAACTCATTATCCAGATCCATGGAGTCCCTCAGAGCAAAGCACAAAAGTGAGTCCCTCAACTCCCCCACGACCAAGAGGAAGAGAGTCAAGTTCACCACGTTCTCCTCCATTGCGGCAGACCACCGCCGCCCATCCACTGACTCAATGCTGAAGGACCACGAGCAGGACATTAACTGGGTGGGCAAAGAGGAGAACTGTGTGGAACCTAAATTACTTAATGGTGAATCTCTGGACCATTTA

Function

GO: NA

KEGG:

id description
K17599 TMEM132; transmembrane protein 132

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149036 lncRNA upstream 194245 21848415 ~ 21853057 (+) False AMCG00018820
TU149002 lncRNA upstream 365579 21681320 ~ 21681723 (+) True G118885
TU148961 lncRNA upstream 624532 21370910 ~ 21422770 (+) True G118863
TU148823 lncRNA upstream 1115898 20922368 ~ 20931404 (+) True G118771
TU148752 lncRNA upstream 1359658 20684865 ~ 20687644 (+) False AMCG00018800
TU149148 lncRNA downstream 472651 22547272 ~ 22547691 (+) True G118999
TU149154 lncRNA downstream 483592 22558213 ~ 22558419 (+) True G119005
TU149155 lncRNA downstream 486441 22561062 ~ 22561280 (+) True G119006
TU149156 lncRNA downstream 487931 22562552 ~ 22562810 (+) True G119007
TU149157 lncRNA downstream 489749 22564370 ~ 22564707 (+) True G119008
AMCG00018826 mRNA upstream 10697 22030200 ~ 22036605 (+) True AMCG00018826
AMCG00018820 mRNA upstream 149602 21848370 ~ 21897700 (+) True AMCG00018820
AMCG00018821 mRNA upstream 303563 21715850 ~ 21743739 (+) True AMCG00018821
AMCG00018823 mRNA upstream 355194 21691311 ~ 21692108 (+) True AMCG00018823
AMCG00018806 mRNA upstream 1135225 20896914 ~ 20912077 (+) True AMCG00018806
AMCG00018828 mRNA downstream 16082 22090703 ~ 22091323 (+) True AMCG00018828
AMCG00018829 mRNA downstream 16725 22091346 ~ 22091618 (+) True AMCG00018829
AMCG00018827 mRNA downstream 40989 22115610 ~ 22138293 (+) True AMCG00018827
AMCG00018834 mRNA downstream 326880 22401501 ~ 22422814 (+) True AMCG00018834
AMCG00018833 mRNA downstream 366182 22440803 ~ 22449329 (+) True AMCG00018833
TU148883 other upstream 858056 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 1291082 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 1443987 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 1453163 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 1454286 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 3159461 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 3409676 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 4385999 26460620 ~ 26461227 (+) True G119762

Expression Profile