RNA id: AMCG00018831


Basic Information

Item Value
RNA id AMCG00018831
length 867
RNA type mRNA
GC content 0.57
exon number 1
gene id AMCG00018831
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22291981 ~ 22292847 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGAGGTTTTCATCCCCCCCGGCTTACCTCCCCGTCAACTACCAGATCCTAAACGCCGAGTCGGCCTTCTTCCTCAAAGAGGCCAACCAGGATATCATGCGCAATTCCAGCCTGCAGGCGCGGACTGAGCCCTTCTTCATCTACCAGGCCAGGAAGATGCCCTCCATCAATGCCAGCTACGGCCCCCTGTCAGTGGAGCAGCCCGTTCCCCTGGAGCTCCTGCAGAGCCCTCGTGCTTTCGTGGCCTCCTCCATGTTCACCTTCAGCTGGAAAGTACAGACTTACATCATCAGCGATAAGATTTACTTTAACCGGCCCAAAGTGCAGGTGTTGTTCTACATCGCGGGGAGGGATTGGGACGATTATAGCACAATTGACAAACTGCCCTGCGTCAAAATGTTTGCTTTCCGTGAGACCCAGGAGGTCCGAGGAACCTGCCGGCTGAAGGGGGAGCTGGGTTTGTGTGTGGCGGAACTGGAGCCCCTTATAAGCTGGTTCAATCCGCCCAGTGTGGTCCCAGGTCGGCAGAGGACACTGGACCAGTCCGAGGGGGCCCCTGTGGAGCTCTACTACGTGGTGCAGTCTGCGGAGAACGGGGAGTGTAACTCCGACGACTCCAGGAAGGGGAATTCTATCCGCTCTGAGCAGGACAGCTTCTTTGGCTCGTCCACCACCTCCCCCATGCAGCGGATTGGTAGTGTCCGCTTGTACCAGAGCCCCAGGGCCCCGCCTCTCTCCGAGCTGAGGCTGGATAGTAACTTTGTCATCCTGGTGCCTTCCAGACCTGTCAAACAAAGGGATACCGTTACCGCTTTTGTGACAACAGCCAGCGTTTCCACTGTGGAGATGTTTACCCTGAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149088 lncRNA downstream 138267 22151354 ~ 22153714 (-) True G118947
TU149015 lncRNA downstream 573178 21703302 ~ 21718803 (-) True G118892
TU149007 lncRNA downstream 589933 21694983 ~ 21702048 (-) False G118889
TU149209 lncRNA upstream 334698 22627545 ~ 22630125 (-) True G119048
TU149241 lncRNA upstream 370986 22663833 ~ 22664099 (-) True G119070
TU149243 lncRNA upstream 374082 22666929 ~ 22667210 (-) True G119072
TU149317 lncRNA upstream 469513 22762360 ~ 22766026 (-) True G119128
TU149321 lncRNA upstream 541912 22834759 ~ 22857679 (-) True G119129
AMCG00018830 mRNA downstream 68281 22176958 ~ 22223700 (-) True AMCG00018830
AMCG00018824 mRNA downstream 337033 21953234 ~ 21954948 (-) True AMCG00018824
AMCG00018822 mRNA downstream 382492 21897806 ~ 21909489 (-) True AMCG00018822
AMCG00018818 mRNA downstream 616785 21672274 ~ 21675196 (-) True AMCG00018818
AMCG00018817 mRNA downstream 625297 21648834 ~ 21666684 (-) True AMCG00018817
AMCG00018835 mRNA upstream 130559 22423406 ~ 22438354 (-) True AMCG00018835
AMCG00018840 mRNA upstream 188292 22481139 ~ 22487712 (-) True AMCG00018840
AMCG00018839 mRNA upstream 205172 22498019 ~ 22537319 (-) True AMCG00018839
AMCG00018841 mRNA upstream 268174 22561021 ~ 22582839 (-) True AMCG00018841
AMCG00018842 mRNA upstream 291320 22584167 ~ 22586036 (-) True AMCG00018842
TU149076 other downstream 178286 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 1594154 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 1686161 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 1686161 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 1801243 20490211 ~ 20490738 (-) False AMCG00018790
TU149337 other upstream 511498 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 2782551 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2841924 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2893360 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 4520633 26813480 ~ 26814073 (-) True G119827

Expression Profile