RNA id: AMCG00018834


Basic Information

Item Value
RNA id AMCG00018834
length 3739
RNA type mRNA
GC content 0.54
exon number 26
gene id AMCG00018834
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22401501 ~ 22422814 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCCTACTCCAGAGCCACAACACCaggctgagggagagagggcatGCTGGGCCACTGAAGGGGAAGTTCACTCCTGGAAGAGAGCCAGGCTCTCCAGCTCTTAGAGCTCTGGGGACCCCCACAGGGGCGTCCCCCCCTCAAGAGGAGGGCAGTGAGCAACACATAGCAAGTCTGAAAGCAGATTTCATGAACAAGACTCTACTCCAGCAATGCCAAGAACTGGTGAAAGTGATTGATGAATACCCAGCTAAGGAGCTGCACTTGATTTTCCCCTGGCTGGTAGAGACAGTCCTTGGCAGCCTGGATGGCGTCCTTCTAGGCTGGAACCTGCGATACCTGCAAGCCAGGACAAACGAGTACCTTACAGCTGTGGATTTCTTGGATCCCAGtggTCCAATGATGAAACTTGTGTACAAACTGCAAGCAGAGGAATACAAATATGAGTTTCCAGTCAATCATCTGCCTggtCCTGTGAAGGCTTCCATCCAAGAAGGCGTCCTCCCAGATTGCCCGCTGTTCCACAACAAGCTGCAGTTTCCTCTGCCTGGCCTAATGAGCCTCACCCTCTCACTCAATCCATTTGAATATTACATGTTTCATTTTGCTGCCAGCCTTACATCTCTAAGGtGTTACCCAGTGGGGCAGCATGTCAGTACCTCAGACAGTGCGTACTTCCTATTGGTGGACAGCTACCTGAAGTACTTCCTGCCAACAGAGGGCAGCGTACCGCCCTCTCCTTTCTCAGATGTCAGAGGCGCAGTGTCCCCTCCTGCACCCAGCCTCCTGAAGCGGCACATTTCCCACCAGCCCTCAGTCAATGCCGATCCAGCAGCCCAGGAGATCTGGAGGTCCGAGACGCTTCTTCAGGTTTTTGTGGAGATGTGGCTTCACCATTACTCCCTGGAGATGTACCAGAAGATGCAGTCCCCACAGGTGAAGCTGGAGGTGCTCCAGTACCGTCTGGGTATTTCCAGTATGCACTACAGCACTCCTGTCCTGCCAGGCTATGGGAACCTCCACACGTACCAAGAGCCCTTCAGCCCTACTGAGGAGCACGTGTTGGTGGTGAGGCTTCTGGTGAAACATCTCCACGCCTTCTCCAGCAGTCTGAAGCCAGAGCTGATCTCCTCCTCACCCTCCGCTCACTCCCACACCAGCCCTCTGGAGGAGTTCAAAAGGGTCGTGATCCCCCGGTTTGTGCAGCAGAAGCTGTACGTGTTCCTTCAGCACTGCTTTGGTCACTGGCCCCTCGACGCTTCTTTCAGAGCAGTTTTAGAAACGTGGCTCAGCTATATACAACCGTGGAGATACATCCCTGAGAAACACAATCCCCAAGTGGATAATCAGAACCGGAGTGTGCCAGACAAATGGGCCTCCTTCTTGCAGGAGAATCTGCTGATGTACACCAGACTCTTCCAGGGCTTTTTAAACCGGGCAGTACGCACCGACCTGGTTAATGCCAAGAACGCGCTGATGGTTTTCAGGGTGGCGAAAGTCTTCGCTCAGCCCAACTTGTCAGAAATGATCCAGAAAGgaGAGCAGCTGTTCCTGGAGCCCGAGCACGTCCTCCACCACCGCCAGCACCGCCTCTTCATGACACCCAGTCATGGTGGCAGCTTCCTGTCCTCACGCCAGCCCATCAACACAGACGGCGTCTTCAAGGTCAAGAACCACGTGTACAGCCTAGAGGGCCAGGACTGCCAGTACAAGCAGATGTTTGGGCCCGAAGTGCGAAACAACGTGTTAAAACTGGTCCGGATGATCGCACAAGCCAAACAAACTGCAAGGTCCATATCAGAGCACTCTGCAGAAGCAGCTGCCAGTCAGTCCTTCCTCTCCTGGTTTGGGTTCGGTTCCTCTGATCTGAACACATCCTATACAGGGAATGAGCTGGATGATATGGGGTTGGAAACCATAAGGAAGACTGATGAGTATTTGGAGAGAGCGCTGGAGTATCTCTGTCAGGTATTCCGGTTGCCTGCAGGACAGCTATCCCAGCTGATGGTGAGCTTTGTGTCGACGCAAGATGATGCTGGAACCCGGCAGCTTCCTGACTGTATACCGGGAGAGAACGGACCGGTCCTCACCGATCTGGGAAGACTGCAGATTATTAACGGACTCCGCAGATTTGACATCGAGTACCAAGGGGACCCAGAATTACAGCCCATAAGAAGCTATGAGATCGCAGTTCTTGTCCGTCTGCTCTTCCGCCTGTCGTGCTTCATTAACCAGCGGTTTGCAGGAGAGATGAACGCCCTCTGCAGCAGACGTGGCTTTGTGGGTCGTTTGAGCCGGCACTACCTGACCCAGCCCAGTGCCGGACCGATCTCCAGGAGAAGCCCCGCGACCCTCCGTGGTGCAGGGAGGCAGACCCGCCCGCGCGTCAGCCTGCGGTTCCTGGCCAGCATCCGCACTCTCCTCACCGTCTTTCTGCTCTACTTGCTGGCCTCGTTTTTTTCCATTGGCCCTCTGTCCTGCACCTTCTGGACATTGCTAGCTTCTCGTTACCCACGACCTTTTCGCCCCGATGCCCCTGTTGTTGATGCCCAGAGGACGACTGTCCCCCCCGGCGACATGGACTCGGGTCCGAGGCGGGTCGCGGCGCTGGAGCGGGACCTGCAGTTCCTACAGCAGCAGCACCGAGACACGCTGGGCAAACTGCATGTGGAAATAGAGCAGCTCAAACGGGACAATAAAGGGAGCGCTGTATCCTCCAGTGCCAAGCCAAGCGGGCGCAGAGCCAGCCAGCAGATCTTAGCATCCTCAGGTTCCTGTAGGAAGACAAATAGGCCACAGCTTCTGCAGCAGCAGGGAGATTCCCAGGCATGTAAAGGGAATTTCTTGGAGCAGACCGTGCACACACTGGATCTGCACAGCGGCCCCCCACAGGACCTGGCCCACAGCGACCTAGAAATCGGTACCGATGCATCCAGCCTCCCTGCTGCCCTGACCCACCTGGAGCCTGAGCCGCAGGGGGGTCTCATCACTTCCCTGCAGCCCCTGAGGATCCACTGCAGCTCCTCCCAGCCCCCCCGGGCCCCAACCCTGCAGGAGTGCGAGGTCATCATCCGCCAGCTCTACAACGCCAACAGCCTGCAGTCCCAGGAGCTTCTGCGCATGAAGAGTGTTCTGAAGGATATTGtcatcaacaataacaaaatgacCCCTGAAACTTACATTCTCACCAAGGCGTACCTCACCGACACCACCAGGATTGACGAAGCTGCAAGATTTCCAAAACTGCCTCTAAAAGCACTGCCAAAGAAACTGCCCGAGGCCCAGCCTACCGTGGCAGAGCGGGTGATCCTGCCAGCTCTCAAGCAGTCGCTGGGGAGCAGCTTtgcagagagacagaagagagCGCAGGCGGTGCAGAAGAGCCGCTTACGCAGAGCCGTGCACTGAGGGACTGACATGTTACAGACACTGTATAGAACAGGCTTCCTTTAGCAGTAAAATAGACGCATACTACACATTTCATATCCAGACTTCTTTTATCATACAAATCTGCTGTGATTAAGTTGCTCTAAGGTTAGTGGTTGAGCTGGCTGAACGGTTTCCTATATACACGCAACATGGCAACACAATCTCTATATTCCTGACTCAGAACAGTCACTATATGAACAGTTGGGGAACAAAATGCTTTGGAGTCCAGCCAGTTTGAAACATGGGGACTTTCTGGAAGATAATGATCAATAAACATGGGAATCACTAGaaataaagtgctttaaaaGTT

Function

GO: NA

KEGG:

id description
K12353 SMPD4; sphingomyelin phosphodiesterase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149036 lncRNA upstream 548444 21848415 ~ 21853057 (+) False AMCG00018820
TU149002 lncRNA upstream 719778 21681320 ~ 21681723 (+) True G118885
TU148961 lncRNA upstream 978731 21370910 ~ 21422770 (+) True G118863
TU148823 lncRNA upstream 1470097 20922368 ~ 20931404 (+) True G118771
TU148752 lncRNA upstream 1713857 20684865 ~ 20687644 (+) False AMCG00018800
TU149148 lncRNA downstream 124458 22547272 ~ 22547691 (+) True G118999
TU149154 lncRNA downstream 135399 22558213 ~ 22558419 (+) True G119005
TU149155 lncRNA downstream 138248 22561062 ~ 22561280 (+) True G119006
TU149156 lncRNA downstream 139738 22562552 ~ 22562810 (+) True G119007
TU149157 lncRNA downstream 141556 22564370 ~ 22564707 (+) True G119008
AMCG00018827 mRNA upstream 263208 22115610 ~ 22138293 (+) True AMCG00018827
AMCG00018829 mRNA upstream 309883 22091346 ~ 22091618 (+) True AMCG00018829
AMCG00018828 mRNA upstream 310178 22090703 ~ 22091323 (+) True AMCG00018828
AMCG00018825 mRNA upstream 326880 22047302 ~ 22074621 (+) True AMCG00018825
AMCG00018826 mRNA upstream 364896 22030200 ~ 22036605 (+) True AMCG00018826
AMCG00018833 mRNA downstream 17989 22440803 ~ 22449329 (+) True AMCG00018833
AMCG00018832 mRNA downstream 32425 22455239 ~ 22460417 (+) True AMCG00018832
AMCG00018836 mRNA downstream 181537 22604351 ~ 22627498 (+) True AMCG00018836
AMCG00018838 mRNA downstream 207731 22630545 ~ 22636051 (+) True AMCG00018838
AMCG00018837 mRNA downstream 228325 22651139 ~ 22659793 (+) True AMCG00018837
TU148883 other upstream 1212255 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 1645281 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 1798186 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 1807362 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 1808485 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 2811268 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 3061483 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 4037806 26460620 ~ 26461227 (+) True G119762

Expression Profile