RNA id: AMCG00018838



Basic Information


Item Value
RNA id AMCG00018838
length 834
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00018838
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22630545 ~ 22636051 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCCACAGTTTCATGCAAGAATACCTTCAGATCCCCGCCGTCACCAGGACCTACACCACCGCCTGCGTTTTAACCACAACTGCAGTGcaaCTGGAATTCATCACTCCTTTTCAGCTGTACTTCAACCCCGATCTGATTTTTAAAAGATACCAGATATGGCGACTGATTACCAACTTCCTCTTTTTCGGCCCCCTCGGATTCAGTTTCTTGTTCAATATGATCTTTCTGTATCCTTTATATCGTTATTGTCGAATGCTGGAGGAGGGCTCTTTCCGGGGCAGGACAGCTGACTTTGTCTTCATGTTCCTCTTTGGGGGAGTGCTCATGACAGTATCCTTTTCCAGACACTGGGGGACCCATGTTTTCATGGCCAGTTTAAATCTTCTGACTTCAGTCCTGTTTTTCCTGGGCCAGGCTTTCACCATCATGCTGGTTTACGTGTGGAGCCGTCGGAACCCGTACGTTCGCATGAACTTTTTTGGCCTTCTCAACTTCCAGGCCCCTTTCCTGCCCTGGGTGCTTATGGGTTTCTCTTTGTTGCTAGGCAACTCCATTGTCATTGACCTTCTAGGTATTGGTGTTGGACACGTATACTACTTCTTAGAAGATGTTTTCCCAAACCAACCAGGAGGGAGAAAACTGCTGGGGACTCCAGGGCTGCTGAAAGTAATTTTTGATGCCCCTGAGGAGGATCCCAACTACAGCCCACTGCCTGAGGACCCAGTGGGGGAGCCTGGCCAAGAAGGATGGGGTGAGGGAGAGCACAGGCCGGGCCACGAGGATCAAGAGCCCCCAGAAGACCCCCAGGATCAAAATGCACAGCAGCGATAG

Function


GO: NA

KEGG:

id description
K13989 DERL2_3; Derlin-2/3

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149165 lncRNA upstream 51209 22579051 ~ 22579336 (+) True G119016
TU149164 lncRNA upstream 52832 22577501 ~ 22577713 (+) True G119015
TU149163 lncRNA upstream 53585 22576722 ~ 22576960 (+) True G119014
TU149162 lncRNA upstream 54855 22575459 ~ 22575690 (+) True G119013
TU149159 lncRNA upstream 62565 22567766 ~ 22567980 (+) True G119010
TU149242 lncRNA downstream 30841 22666892 ~ 22667141 (+) True G119071
TU149282 lncRNA downstream 129500 22765551 ~ 22861808 (+) True G119100
TU149377 lncRNA downstream 343220 22979271 ~ 22982799 (+) True G119177
TU149378 lncRNA downstream 358925 22994976 ~ 22995190 (+) True G119178
TU149439 lncRNA downstream 458515 23094566 ~ 23108600 (+) True G119231
AMCG00018836 mRNA upstream 3047 22604351 ~ 22627498 (+) True AMCG00018836
AMCG00018832 mRNA upstream 170128 22455239 ~ 22460417 (+) True AMCG00018832
AMCG00018833 mRNA upstream 181216 22440803 ~ 22449329 (+) True AMCG00018833
AMCG00018834 mRNA upstream 207731 22401501 ~ 22422814 (+) True AMCG00018834
AMCG00018827 mRNA upstream 492252 22115610 ~ 22138293 (+) True AMCG00018827
AMCG00018837 mRNA downstream 15088 22651139 ~ 22659793 (+) True AMCG00018837
AMCG00018847 mRNA downstream 48826 22684877 ~ 22692816 (+) True AMCG00018847
AMCG00018845 mRNA downstream 75641 22711692 ~ 22719425 (+) True AMCG00018845
AMCG00018848 mRNA downstream 94677 22730728 ~ 22742264 (+) True AMCG00018848
AMCG00018849 mRNA downstream 107958 22744009 ~ 22752505 (+) True AMCG00018849
TU148883 other upstream 1441299 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 1874325 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 2027230 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 2036406 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 2037529 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 2598031 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 2848246 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 3824569 26460620 ~ 26461227 (+) True G119762

Expression Profile