RNA id: AMCG00018839


Basic Information

Item Value
RNA id AMCG00018839
length 3784
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00018839
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22498019 ~ 22537319 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGGCCAGAGTGTTGTCCTCAAGGACAGCAGGGTAGACAAATTGATGAGTCAGACACCGGAAGAAAAGATCTTTGTCATCACGGCCACCTTTGCAGCCCTGACGCCAACGCTATTTCTTCTGCTGCCGATTCCCCGTCCTCTGGCTGCTGCCACTGTGGCCACAGCTGCCGCTCTCTGCTGCTCTCGCACCGTGCTCTCGAACCCTAGGCAAGGAATCTGGCGAATTCCAGTGGATGAAATCGATCGCCCAGGCAGTTTTGCATCTCATATGAACCGCTCCATTGTTCTCTTACTGGAGGTGCTGTCTCAGCTCAAGGATCACGATACTCTGCTGAAAGTCTCTTTCATGCTCCAGAGGACTCCGGACCAGGGAAAGAAATATTTGCGGGATGTGGATCGTCAAGTTCTCGCCAAGAAAGCCTTTTTCCTTACTGTGAATGTTCTGGAGGACACTCTGAACAAACTCACTGGGGTGTCAGAACAGCCACCTTCCAAAGTGTCCGCACCTTTGATGGGGGAGATGACGACGGACGTTTCCAAGAAGCCCAGTGCGGAGGACAGCAAGCGGGGGCTGCCCAAGAAGCCGGGGCTGACGGAGGGAGCCAGCCCACAGAGCTCCGACAGTGGGCCCCGAGAGCTCCCCCAGGGGCCGTCTGCGCAGGGCATGGACACCGCAGAGCAGCAGGGGGACAAACCGGAGAGGAGGGAGGTGTCAGGGGGAGAGGCGGCCAGACCCGGGGCTGACGAACCTATGGAGCTGGACGCCGGGCAGTGGGGTAGCGCTGGCAGGATGGACCCTGCCTCGAAATCCCTGGAAACGGACTTTCCAAAAGCCACCCAGGATCCGGAGCGGAAAGCCCCCGAGAGCAGCAGCAGGGACCCCGAGCTGTCCCTGGAGGAGCTCAGCATCAGCTCCAAGCAGCAACTGCTACAGCTACAGCAACTACAACAGGCCTCCGCGGCCAAGGGACAGGTGTCCGCTAGTGGGACAGAGGCTGGCATTGTGCGCAGACACAGCAGGAAAAGGAAATTGCTCGAGGATGCCGAGTCTGGGAAAACACTTCTGTTGGACGCTTACCGAGTCTGGCAGCAGGGGCAAAAAATCATGACTTACGACCTGGGCCGGATCGAGAAGATCATGTCAGAGACATACATGTTAATTAAACAGGTCGATGAAGATGCAGCTTTGGATCAAGCGGTGAAATTCTGCCAGATACACATGGCCACTGCAACACAGAAACAGTCCGCTGGCGATACACCCACCACTCCTAAACACACCAAGGAGCACCGCGAGATCTTCTTCCCCATTACGCCCACCCCCCTGCTCTCCTCCGCGACACAAGCCCCAGGGGGGGCCCAGGAAACCCCCGCCTCCCAAGACAGCGTGGTCAAACTGAGCTCCGAGCAGCCGCCCAAACCGCAGAAGCAACCGCCAGCCTCCTCCTACTGCCCCCCAGCTAGCACACAGGACCAGGCCCAGATGACGAGGCAGCCCCCGGCCCCAGCCATGGCCTATCTCCCTCAGACTGACCAGCCGGATGAGCCTCTGGAGGGGCTGGGCTACCGGCAGCAGGAGTCCCACTTGTGCCAGCAGATGAAGATGGCGAGTGTGTCCCCTGGGCAGGATCCGGCAGGCTGGCACTCCGAGAGCGCCTTCAGCCAGCAGGAGGCCTTGGGCGACCCCTCACACTCGGTCTGCCAAGCCACGTCTCTGAGCTCGTCCCCCGACCCGCTCTCCCCTGGCGGCCAACAGAGCAAACAGCTGGACAGCAGCCGCATCCGATCCCGCATCCCACCCAACATGCCAAAGCTCTTCATCCCCTCCACCGTGACCAAGTTCCCCCCGGAGATCACCGTCACCCCGCCCACCCCCACCCTGCTCTCCCCGAAGGGCAGCATCTCAGAGGAGACGAAGCAGAAACTAAAGAGTGCCATCCTGTCTTCGCAGTCGGCGGCCAACGTGAAGAAGGAGACGCTGTGCCAGCCAGCGCTGGAGGTGCAGGAGACGTCGAGCCAGGAGTCATCCCTGGAGAGCGACACGGACGAGGAGGACGACTACATGGACATCTGAGCGGCCGGCCCTCACCTCGCCATGCCCAGCGTCTGCTCCCCTCCCCTCAGATCTGCTGGGAGACGATATTGCGCCACTCACCTAGTGCAAAAAAGACATGTGTGTTAAAGATGAATCTGTGAAAACCAGCAGTCCCACCATGCTGCCCACCTCTCTGCCCTCTTTTCCTCTCGGTCTTGGCATCGGGGGCCCCAACCATGAAAAGAAAGTTCTGTTGGTGTAATTACAGACCGATCTCTGGCCttctggttttgtttgattCCATGTTCACCTTAAACCTCTTCTGGAAATGGAAGCTTATTGATTTGtgttctttgtttgtgtgaagCTCATCGCTCAGATAGTTTTATTTACACAGATGTCTAAGTATTGTAAGTCATGCCAGGGATTGAGAGCTTTATTTCTCCAAGATGATATCATACCCTTCTCTGTGGGCAATCCACCCagaaggtttttttgttttgttttgttttattttatttttctgactgACACTTCACAGTAAAGATTCAAGGTGGGAATATTATAAAATCTAAATGTGCCATTACTCTATCATGGAAATTGTTGAATTAAGCTCAAGTTCGAGAGTAATTTAAGGATGCAAAGCATTGCCTCAATCCAAACTATGCAGATCCCATTTCAACTGCAGTGCAAGTGTATGGTCTCTTTGGATCTGTTTGTTAAACTAAATGATACAATTTATGCATCTCAAGCAGGACAAGAAACAATAGAGAGTATTAGAGGACTCTACTCTACCTGCCTCTCTGCTTTAGTGCAGGTGGGCAGGGGTGCTGACCTTCAGTCTGTGCTATGTGCCAATCACACATTTCTAGGCTTTTTCCTAATAACAAAGGGGAATCATTCTGAGATATAGTTTAatggagtgtttttgtttttattttacttgaaagTAAACCATGCTGAAAAGGAACTGAGGGAATGGTGGCATTACCTTACAGTCTGCTGAACAGTCTTTTGGACTGGGCTCAGATACGACAATGGGTATTTTACCATTTCATCATCATGTAATATTGAGAACCTGCTTCCATGCTAGAACTGTCCAATCAAGAATCCACATACTGGCAATGAGATCATGTGATGATGTGTGGTTTAAAAGATTTACATTGTTTGTATATTATGTGTAATGAGCAGTTGTGTCCTTCAGACTATTACTTTGAGAGTTACAACTGCAAAACCGCATCAGTGGCTCCCTGACGGGTTTTAACTTTGAGGAGAATGCATCACAGAACGGCGAGGGCTGCGGTCAGCAGTGCAGAGATCAGGTGGCCGTGGGTGGGGAGCTTATAACGTTACAGTAACAGGAGAGGGAGTTCCTGTAAGACATACAGAGCAAATTTCAATGGCCAGTTTCCAAATGGCATATCTTTTGGGTACAAAAATTTCCCTTTTGGAGTATTTTTGCAATcacagtatttaaacattttactcgGGCTGTATACATTTACTGACTAAAACAGGATAAATGTTTGGGCTTTTATTTGTCCTGTTTTGTTCAAACTTTTTCATTCCCTTATTTCCAATGGGTATTTTCTTTGgagtgtaaattaaaatgtatctttaaaggACTAACTAAACATTGAAGACACAGGAATGTTTTTATACAGATTGTTTTCTATAAGGAGATGGATATTTGCAGTATTTGTATGGAAAATACTGggggggtatttttttttttttttttttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149088 lncRNA downstream 344305 22151354 ~ 22153714 (-) True G118947
TU149015 lncRNA downstream 779216 21703302 ~ 21718803 (-) True G118892
TU149007 lncRNA downstream 795971 21694983 ~ 21702048 (-) False G118889
TU149209 lncRNA upstream 90226 22627545 ~ 22630125 (-) True G119048
TU149241 lncRNA upstream 126514 22663833 ~ 22664099 (-) True G119070
TU149243 lncRNA upstream 129610 22666929 ~ 22667210 (-) True G119072
TU149317 lncRNA upstream 225041 22762360 ~ 22766026 (-) True G119128
TU149321 lncRNA upstream 297440 22834759 ~ 22857679 (-) True G119129
AMCG00018840 mRNA downstream 10307 22481139 ~ 22487712 (-) True AMCG00018840
AMCG00018835 mRNA downstream 59665 22423406 ~ 22438354 (-) True AMCG00018835
AMCG00018831 mRNA downstream 205172 22291981 ~ 22292847 (-) True AMCG00018831
AMCG00018830 mRNA downstream 274319 22176958 ~ 22223700 (-) True AMCG00018830
AMCG00018824 mRNA downstream 543071 21953234 ~ 21954948 (-) True AMCG00018824
AMCG00018841 mRNA upstream 23702 22561021 ~ 22582839 (-) True AMCG00018841
AMCG00018842 mRNA upstream 46848 22584167 ~ 22586036 (-) True AMCG00018842
AMCG00018843 mRNA upstream 51233 22588552 ~ 22590324 (-) True AMCG00018843
AMCG00018844 mRNA upstream 100374 22637693 ~ 22645367 (-) True AMCG00018844
AMCG00018856 mRNA upstream 216648 22753967 ~ 22760428 (-) True AMCG00018856
TU149076 other downstream 384324 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 1800192 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 1892199 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 1892199 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 2007281 20490211 ~ 20490738 (-) False AMCG00018790
TU149337 other upstream 267026 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 2538079 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2597452 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2648888 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 4276161 26813480 ~ 26814073 (-) True G119827

Expression Profile