RNA id: AMCG00018840


Basic Information

Item Value
RNA id AMCG00018840
length 1488
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00018840
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22481139 ~ 22487712 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCCAATACACAACCCTCTGGCCCCCAGCCACCACAGTTCATTACAGCACACGTTACCCGAATTAAAAGAGCTGAGAGACCTAAAACCCAACTTCAGCATACCGCCCTCATCCGCGGCCCCCGCAGGCTCTGACCCCTACCTGCAGAGCAACGTGCGCATGACCCTGGAGGACTCGAACCTCTGGAAATCTTTCCATGAATTAGGGACGGAGATGATCATCACTAAACCTGGCAGgcGGATGTTTCCACACTGTAAAATCAACCTGTCAGGGCTGCTGCCCTACGCAAAGTACATAATGCTGATGGACATGGTGCCCGTAGATGGATTCAGATACAAGTGGAACAAGGACAGGTGGGAGGTTGCTGGGAAGGCTGAGCCGCAGCCCCCCTGCAGGACGTACCTCCACCCCGACTCCCCGGCCCCCGGGAGCCACTGGATGAAGCAGATGGTGTCTTTCCTGAAGCTCAAACTGACCAATAACACCCTGGACCAACACGGCCATATTATTCTGCACTCAATGCATCGTTATCAGCCACGCTTCCACATCGTGCAGGCTGACGACCTCTTCAGCGTGCGCTGGAGTGTGTTTCAGACATTCACCTTCCCTGAGACCACGTTCACCGCTGTTACTGCATACCAGAATGGAAAGataaccaagtTGAAGATTGACAATAACCCCTTTGCTAAAGGCTTCAGGGAACAGGGCACAAATACGAAAAGACAACGTGCACTTAGAAGTCATGCGTGCCCAGAGAAGAGCTTGAAGCGGCTGAACGCAGTGAAACCGGAAACAGAGCAGAGAGCCCCCCCCGGTACTGAGTTCAGGAGCACTTTCTATGAAGGCTATGAGCAGGAGCAGGCTGAGCTTCCCAAGCCCAAAGATGGAGAGTCGATGAAAGAGGAGCGCTACTCTCCCTGGGGTGCAGAGCATGACCCATCGCACAGCCTGCGCACAGAGTCCCCCCTGGGCTCGGACACCAGGGAGATCTACAACGCAGAGCAGATGGTCCCCACGCCCACCTCCTACCAACCATACAGGTTCCATGAATTTGGAAAATCTCCTTCCCCCTCTTCCAGCACGGCCAGCACCAGCAGCGGTGGGCGCCCCAGCTTTGAGTCCAGAGTTCCCGATGTGGCCACTGTGCCAGACCAGGATGCTAAGCCCTCTTCCCTGGAgatgctgccctcctcctgtcCTCCATCTCTCCCAACCGGCCACGCCACCCCACAGGACTACACAGGAGTGCTCAACGTCGCCATGGCGCCCCCACCAACCAAACCCGGAGTCATCGGCCACATGTATAACCCCTACACTACAGAGCAGGCTCTCGGGCAGTGGAACGGGCCACCGCACAGTCAGTACGGGTCCTCGGCCTACCCCGGACACCACCTCCCCTCAGACTACAGTGCACAGAGCATGCACCACGGCTATCACCACGGCAATATGGCTGAGTGGAGCCAGTACCCCCTGTTCTCTTACTCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149088 lncRNA downstream 327425 22151354 ~ 22153714 (-) True G118947
TU149015 lncRNA downstream 762336 21703302 ~ 21718803 (-) True G118892
TU149007 lncRNA downstream 779091 21694983 ~ 21702048 (-) False G118889
TU149209 lncRNA upstream 139833 22627545 ~ 22630125 (-) True G119048
TU149241 lncRNA upstream 176121 22663833 ~ 22664099 (-) True G119070
TU149243 lncRNA upstream 179217 22666929 ~ 22667210 (-) True G119072
TU149317 lncRNA upstream 274648 22762360 ~ 22766026 (-) True G119128
TU149321 lncRNA upstream 347047 22834759 ~ 22857679 (-) True G119129
AMCG00018835 mRNA downstream 42785 22423406 ~ 22438354 (-) True AMCG00018835
AMCG00018831 mRNA downstream 188292 22291981 ~ 22292847 (-) True AMCG00018831
AMCG00018830 mRNA downstream 257439 22176958 ~ 22223700 (-) True AMCG00018830
AMCG00018824 mRNA downstream 526191 21953234 ~ 21954948 (-) True AMCG00018824
AMCG00018822 mRNA downstream 571650 21897806 ~ 21909489 (-) True AMCG00018822
AMCG00018839 mRNA upstream 10307 22498019 ~ 22537319 (-) True AMCG00018839
AMCG00018841 mRNA upstream 73309 22561021 ~ 22582839 (-) True AMCG00018841
AMCG00018842 mRNA upstream 96455 22584167 ~ 22586036 (-) True AMCG00018842
AMCG00018843 mRNA upstream 100840 22588552 ~ 22590324 (-) True AMCG00018843
AMCG00018844 mRNA upstream 149981 22637693 ~ 22645367 (-) True AMCG00018844
TU149076 other downstream 367444 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 1783312 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 1875319 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 1875319 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 1990401 20490211 ~ 20490738 (-) False AMCG00018790
TU149337 other upstream 316633 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 2587686 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2647059 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2698495 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 4325768 26813480 ~ 26814073 (-) True G119827

Expression Profile