RNA id: AMCG00018841


Basic Information

Item Value
RNA id AMCG00018841
length 4029
RNA type mRNA
GC content 0.57
exon number 24
gene id AMCG00018841
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22561021 ~ 22582839 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCGAATCGCAGCTCTAAACGCGGCTTCGACCGCGGGGGATGAGCAGGAGGATTCTCTGAAAAGCCACAAGACCCAGACTAAGGAGGCCCAGGAAGCAGAGGCATTTTCCTTGTACCACAAAGCCCTGGATCTCCAGAAACATGACCAATTTGAGGACTCTGCAAAGGCCTACCATGAACTGTTGGAAACTCCACTACTCAAAGAGGCGATTCCCTCAGAAGATGAGAACGTAGGGCTGAAGCACCCGGGACTGATGCTGAAATACTCCACCTACAAAAACCTGGCCAACCTGGCCGCCCTGCGCGATGACCAGGAGACTGCCATGGATTTCTACCTGGAGGCTGTACTGCTGGACTCCACCGATGTCAATATGTGGTATAAGATCGGTCAGGTGGCTTTGAGGCTGCTGCGGATCCCATTGGCACGGCACGCCTTTGAGGAGGGCCTGCGCTGCAACCCAGACCACTGGCCCTGTCTGGACAACCTCATCACAGTGCTCTACACGCTGAGCGACTACAGCTGCTGCCTGTATTTTATCTGCAAAGCCCTGGAGAAAGATCGCTGCTTCACTAAAGGCTTGGTTCTGAAGGAGAGGATCTTCAAGGAGCAGCCCTGTCTGAGGAAAGACTCCTTCCGAATGTTCCTGAAATGTGACATGTCTGTCCATGACGTGGAGGTGGAGGGGGCCGAGGCTCAGGCCATAGTGGAGGAAGCCCTGGAGCTACGAAGGAGGCGGCAGGCGCTGTGCAGCCGAGAACCACCCCCTGACCTCCAGCTCATACAGCCCATCCCTTACTTCACTTGGAAGTGTCTTGGGGAGAGCCTGCTGGCCATGTACAGACACCAGACCACCTGTGAGCCTCCACGGCCCAGCCTGGGCAGGAGGATTGACCTGTCAGAGTACCGGGACCCAAGTCGCCTCCAGGCTTCCCCTCATGCTTTTGCTCCTGTCAGTGTGATCCAGACCATCCCCAGCAACACCAACACCTCCCTGCCCATCACAGAGCTCCCCCCTCTCACTCAGCCCACCACCCTGGCGCAGATTGCCCAGAATCAGAACGTGGTAGAAGTCACCACATCCATAGCTGGAGATTCATGTTTGTCTGACAAAGTGAAGAAAGCCCCAAAGAGGAAGAGAGTGATTGAAGATAGTGGTGAGACAGCCAAGCGCCGTTCAGCTCGTGTCAGGAACACCAAGTGcaagaaagaggagaaaatTGACTTCCAGGAGCTGTTACTGAAGTTTCTTCCATCCAGGTTAAAGAAGCTGGACCCAGAGGATGATGAGGAGAGCCTGAGTAACTATGAGATCCAGTCTGAGGTCAAGGAAGACAACCAGCAGCTCATGGGGTCTCATTGTATGTCTTTCGACTCCACAGTTTTCATGGAATCAGAAAGGCACGATGTTCACACCTTTCTCCTCAACAATATGTCCAACGGTGGAATCCTGGAGCTGATGATGCGATTCCTGAAGGCCATTGGTCAGAAGTTTCTGGAGGAGTGGCCACCTGAGCTGGTAGCCGTGGTGTTGGAGATCTATCAGAGCTGGAGGAAACACAGCATTGGCCTGCCCAATCCCCTGTTGCGGGACTGCAGCAACCAGCACATCAAGGACATGATGGTGATGAGTCTGTCCTGTATGGAGCTCCAGCTGGAACAGTGGTCACCAACCAAGGGCAAGAATTCCACAGTGTCTCCCCGTAAGTGCCCAGCTGCTCAAAGTGGGGACCAAGGTGGCTTAGATTTTCCAGGGCAGTTTTTCCAGGGGGACCTGATGCAGCTGGCCTTCACCTCCTCCCAGAAGGACCTGTTTGACAATGACTGGCTCCCCTTTGTAGTTAGAGTGTACTGGCTCAAGGCTCGCTTCCTGGCACTGCAGGGGGATATGGACCAGGCTTTGGAAAGCTATGACATCTGTACTGGGATGCTGCAGAGTCAGGCAGCACTACAGGCTGGGagcaaagagggagagaagtaCACCATTCACCTGCCCAACCTGCGAATGGATTCGGCCATCTCTGTGGAAGAGATCGACAAGAAGCTGAAGTCTCTGGAGCGCTGCCAGTCCCTGGAGGAGATCCAGCGGCTGTTCGAGTCGGGAGACTATGAGACGGTGGTGCAGCTCCTGCGGCCCACCCTCAGCAGCGGCGGGGCTGGCCGGGTCAAGGCCCTGGAGTTCGTGACCTCGGTGCCAGAAAGACCTGCACAGCTGCTCCTGCTCCAGAACTCCCTGTTGCAGCAGGAGGATTTCCGCCAGTGCCTGGAGTGCTCTGAGGTGTCGCTCAATGAGGCCTTCCAGCAGATGAACAATGTCTCCACACCCTCCGCCAAGGACGAGTGGGTGACGACGGTGACGCAGCTGCTGCTGGGAGTGGAGCTGTGCCTGTCCCAGGACCCCGACATCCTCCACACCTCTGCCCGCTCTGCCAGCATGGCACGCCTCACCAGCAACCTCATCCAGCTGATAGACTGCAGCATGGCAGTTTCCGAAGACCCGAAGGAGCCCTGCATGTCGTCTGTGCTGCCCTGGATCATCCTACACCGCATCATCAAGCAGGAAGAGGCGGCCTTCCATTGCATGCGCAAACAGCATCTgcagggggaggaagaggaggACGACCCAGACACCCCCATGCTGCCCTCCTCTCTGATGCTGCTCAACACGGCTCACGAGTACCTGGGCAGACGGTCCTGGTGCTGCAACTCCGATGGTGCGCTCCTGAAATTCTACGTGGAGTTGCTCTGGAATGACGCGCTGTTTATGTTCGAGTACTTCAAGCCCAAAACCCTGCCCGAGTTCGACAGCTACAAGACCAGCACCGTCTCCGCAGACCTGGCCAACCTGCTGAAGAGGATTTCCTGCATCGTCCCCTGCAGTGACAAGCCCACCCTGACCATGGACGAGGTGTCGGCCTACATCGAGGGCGTGTCGCACAAGGTGCCTTGTCTCCCTGATGGAGCAGGACCAGCGCCCCCAGTGGTGAATGAGCTATACTACCTTTTAGCTGACTATCACTTCAAGAACAAGGAGCAGTCCAAAGCCATTAAATTCTACATGCATGACATCTGTGTGTGTCCGGACAGGTTTGATTCCTGGGCCGGCATGGCTCTAGCCAGAGCCAGCCGCATCCAggacaagctgaactccaatgAGCTGAAGAGTGACGGTCCCATCTGGAAACACTCCATGTCAGTGCTCAACTGCTTCAAGCGCGCTCTGGAGATCGATGGCTCCAATCTGTCTCTGTGGATCGAGTACGGCACTATGTCCTACGCGCTGCACTCCTTCGCATCACGGCAGCTCAAGCAGTTCAAGACTGAGCTGCCCTCGGAGGTGATCAAACAGATGGAGGAGCGCCGAGACACAATGCTGGAGACGGCCTTCCAGTGCTTCCAGAGGGCGGCCCGCTGCGAGGGGGATGGAGACGAGGAGGAGTGGCTCATACACTATATGCTGGGGAAGATCTCGGAGAAACGCAGGCAGTCGCCCCATGAATACCTGCTGCTTTACAAACAGGCAGCTCACTACCTGCACGAGGAGGCTGCTCGGTATCCACGCAAGATCCATTACCACAACCCCCCGGAGCTGGCAATGGAGGCGCTGGAGTTACACTTCAGGCTCAGCGCCTCCATCCTGAAGCTGCTGGAGGCTGGGGAGCAGGACCTGGACCACCAGATGCTCTTCAACATCATGCAGGAGGCGGCGGATGGGCCCTTCGCCAGAGGGGAAGAAAAGAACATGCCTAAAGCCAGTGAGAAGGAGAAGCCTCCGTCTGTGATTGATGAGGACTCACACTCCTCCATGGGCACGGCGCAGGGTCCCGGGacctccctcccctccactGGGCCAGGTCTGACATCCCCACCTTACACAGCCACACCGGTTGACCACGATTACGTGAAACGTAAAAGCTCccgtcagcagcagcagcagcagcaggagcggCAGGAGCgccagcaggagcaggagcaggccCTGGCTGATGGTACAGTCCCAGTTGTAGATACTACCACTCCAGGGAGGTGA

Function

GO: NA

KEGG:

id description
K17613 CABIN1; calcineurin-binding protein cabin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149088 lncRNA downstream 407307 22151354 ~ 22153714 (-) True G118947
TU149015 lncRNA downstream 842218 21703302 ~ 21718803 (-) True G118892
TU149007 lncRNA downstream 858973 21694983 ~ 21702048 (-) False G118889
TU149209 lncRNA upstream 44706 22627545 ~ 22630125 (-) True G119048
TU149241 lncRNA upstream 80994 22663833 ~ 22664099 (-) True G119070
TU149243 lncRNA upstream 84090 22666929 ~ 22667210 (-) True G119072
TU149317 lncRNA upstream 179521 22762360 ~ 22766026 (-) True G119128
TU149321 lncRNA upstream 251920 22834759 ~ 22857679 (-) True G119129
AMCG00018839 mRNA downstream 23702 22498019 ~ 22537319 (-) True AMCG00018839
AMCG00018840 mRNA downstream 73309 22481139 ~ 22487712 (-) True AMCG00018840
AMCG00018835 mRNA downstream 122667 22423406 ~ 22438354 (-) True AMCG00018835
AMCG00018831 mRNA downstream 268174 22291981 ~ 22292847 (-) True AMCG00018831
AMCG00018830 mRNA downstream 337321 22176958 ~ 22223700 (-) True AMCG00018830
AMCG00018842 mRNA upstream 1328 22584167 ~ 22586036 (-) True AMCG00018842
AMCG00018843 mRNA upstream 5713 22588552 ~ 22590324 (-) True AMCG00018843
AMCG00018844 mRNA upstream 54854 22637693 ~ 22645367 (-) True AMCG00018844
AMCG00018856 mRNA upstream 171128 22753967 ~ 22760428 (-) True AMCG00018856
AMCG00018861 mRNA upstream 184622 22767461 ~ 22768061 (-) True AMCG00018861
TU149076 other downstream 447326 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 1863194 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 1955201 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 1955201 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 2070283 20490211 ~ 20490738 (-) False AMCG00018790
TU149337 other upstream 221506 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 2492559 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2551932 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2603368 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 4230641 26813480 ~ 26814073 (-) True G119827

Expression Profile