RNA id: AMCG00018844


Basic Information

Item Value
RNA id AMCG00018844
length 1560
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00018844
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22637693 ~ 22645367 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGcgtgtcgtttttttttttgtttttactgtacaAGCCGCATGCGCAGTGTGGGGCTTTGTTACAGCCAAGATGGCGTTAAGTAAAACCTTCGGACAGAAGCCGGTGAAATTTCAGCTCGAAGAGGATGGAGAGTTTTTTATGATTGGTTCGGAGGTGGGAAACTACCTGCGGATGTTCAGAGGCTCATTGTACAAGAGGTACCCGTCACTGTGGCGAAGACTAGCGTCTGTTGAAGAGAGGAAGAAGATAGTTGCATCATCACACGATCACGGTTACACAACTTTAGCCACCAGTGTGACTCTGCTGAAAGCATCTGAAGTCGAAGAGATCTTGGAAGGGAACGATGAGAAGTACAAAGCAGTTTCCATCAGCACTGAGCCACCAGCCTACCTCAGGGAGCAGAAGGCAAAGCGCAACAGTCAGTGGGTGCCCACCCTGCCCAACAGCTCCCACCACCTGGATGCCGTGCCCTGCTCCACCACCATCAACCGCAACCGCATGGGCCGAGACAAGAAGAGGACCTTCCCTCTGTGGTTTGTGCATAGCGACTCGGTCTTTCAGTCACTTTTTGATGACCACGACCCAGCGGTGATCCACGAGAACGCTTCCCAGTCTGAAGTTCTGGTTCCAATCCGACTTGACATGGAGATAGACGGACAAAAGCTCAGGGACGCCTTCACATGGAACATGAATGAAAAGCTCATGACTCCCGAGATGTTTGCCGAGATCCTGTGCGATGACCTGGATTTGAATCCCCTGACCTTCGTCCCTGCCATCGCGTCGGCAATCAGGCAGCAGATTGAGTCCTACCCCACAGACAGCATCCTAGATGAGCAGACGGACCAGAGAGTCATTATTAAGCTGAATATCCACGTCGGCAACATTTCGCTGGTGGACCAGTTCGAGTGGGACATGTCCGAAAAGGAGAACTCCCCAGAGAAGTTTGCCCTGAAGCTGTGCTCCGAGCTGGGGCTGGGAGGGGAGTTTGTCACCACCATCGCCTACAGTATCCGAGGGCAGCTCAGCTGGCATCAGAGAACATACGCCTTCAGtgagAACCCGTTGCCCACAGTGGAGATTGCCATTCGCAACACAGGTGATGCCGACCAGTGGTGCCCTCTACTGGAGACCCTGACAGATGCCGAGATGGAGAAGAAGATCAGAGACCAGGACAGAAACACAAGGCGTATGAGACGTCTCGCCAACACAGCACCGGCCTGGTAAAACCTTGTCAGTCCTCAGACGTCTGGGATTCGCAGCTCAAAAGGAACAGAGACTATTGGAAACGACGCCAGCCGATTTGCCCTGAGATACAAAGACATTCCACTATCAAGGCGATCGGAGCCTGTCTTCTTCCAgaacccccacccaccccctcgCTGTATGTGTAAAGACTGATGTCCCTGTTTAATGTCATCCTTGGAACTGATCCACAAAATGCCTGTGTGGAACATGTACTGGTATTGTGctgttaatgtttttgtataGGTGCCCAGAGCACTTTTAGTAAActtgattattttgttctttttttaaataaaattcacGCTTAATATT

Function

GO:

id name namespace
GO:0006337 nucleosome disassembly biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0006281 DNA repair biological_process
GO:0000228 nuclear chromosome cellular_component

KEGG:

id description
K11648 SMARCB1, SNF5, INI1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149209 lncRNA downstream 7568 22627545 ~ 22630125 (-) True G119048
TU149088 lncRNA downstream 483979 22151354 ~ 22153714 (-) True G118947
TU149015 lncRNA downstream 918890 21703302 ~ 21718803 (-) True G118892
TU149007 lncRNA downstream 935645 21694983 ~ 21702048 (-) False G118889
TU149241 lncRNA upstream 18466 22663833 ~ 22664099 (-) True G119070
TU149243 lncRNA upstream 21562 22666929 ~ 22667210 (-) True G119072
TU149317 lncRNA upstream 116993 22762360 ~ 22766026 (-) True G119128
TU149321 lncRNA upstream 189392 22834759 ~ 22857679 (-) True G119129
TU149380 lncRNA upstream 337499 22982866 ~ 22983566 (-) True G119180
AMCG00018843 mRNA downstream 47369 22588552 ~ 22590324 (-) True AMCG00018843
AMCG00018842 mRNA downstream 51657 22584167 ~ 22586036 (-) True AMCG00018842
AMCG00018841 mRNA downstream 54854 22561021 ~ 22582839 (-) True AMCG00018841
AMCG00018839 mRNA downstream 100374 22498019 ~ 22537319 (-) True AMCG00018839
AMCG00018840 mRNA downstream 149981 22481139 ~ 22487712 (-) True AMCG00018840
AMCG00018856 mRNA upstream 108600 22753967 ~ 22760428 (-) True AMCG00018856
AMCG00018861 mRNA upstream 122094 22767461 ~ 22768061 (-) True AMCG00018861
AMCG00018859 mRNA upstream 126069 22771436 ~ 22790973 (-) True AMCG00018859
AMCG00018860 mRNA upstream 164118 22809485 ~ 22821646 (-) True AMCG00018860
AMCG00018857 mRNA upstream 194165 22839532 ~ 22850722 (-) True AMCG00018857
TU149076 other downstream 523998 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 1939866 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2031873 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 2031873 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 2146955 20490211 ~ 20490738 (-) False AMCG00018790
TU149337 other upstream 158978 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 2430031 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2489404 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2540840 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 4168113 26813480 ~ 26814073 (-) True G119827

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071374 False 1469 mRNA 0.48 9 NC_007119.7 30929714 ~ 30944479 (-)
grasscarp (Ctenopharyngodon idella) CI01000006_10211545_10223229.mRNA True 1945 mRNA 0.44 10 CI01000006 10211431 ~ 10223836 (-)