RNA id: AMCG00018845


Basic Information

Item Value
RNA id AMCG00018845
length 1887
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00018845
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22711692 ~ 22719425 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcaaatttaaaaataagccCTGCTCAGCAAAGATACCTAACAGAGTGTGACAGTGACAGGGAGACAGATACATGGTTTGCTCTCCTCCACCCCTTTCTTCAGATTCAGACTATAAAACCAGCACACTTGCATGCATCTTGAAACAATTCCCTCTACAATCATTCctgaagacagacagacggtGAAGATGATGGACACCACATTGACTGACCTGatgaattACTGGAGGCTTATGCTGTTAACTGTCGTGCTAGGAATCGGGGGATCATTTCAATATGGAATTCAAGTGTCTATCATGGCTTCTCCCTCAGAACACATTCAAAACTTTGTGAACCAGACTTGGATGGCTCGGTATGGGGAGCCTGTCAGTGAATCCACACAGAAACTCATGTGGTCCTTCATTGTGTCCATCTTCAGCCTGGGGGGCTGGCTGGGTGCTATCAACAGTGGTACAATCCCAGTCATCTACGGCAGAAAGAAATGTCTGCTCTTCAATAACGTGGTGGCGATCGTGGCCGCGGTGCTGATGGGGTTCAGTCGCATGGCGGGCTCCTTCGAGATGATATTGCTGGGAAGGATTCTGTACGGATACAACGTGGGACTTGGCCTCAGTGTACATCTTATGTACTTGGGTGAATGTTCGCCAATTAAACTACGAGGCTTCCTGACCCTGTCCAGTGCTATCTTCATTGGTTTAGGGAAGGTTATGGctttaaaggtGCTCTGGGGTAACGTGGAGACGAAGCTGGAGCTGGAGGATATGACTAAAGAGCGGGAAACGATGAAAGGGGAAAAGGCCAAGTCAGTGTGGGATGTCCTGACATCACGCTCTGTGCGATGGCAGCTGTTGACCTTAGTCATCCCCTGTGGTCTTGTCCAGCTCTGTGGAATCAGTGCGATCTACTTCTATGCTTTTGATATATTTCGTGAAGCTGGAGTCCCAAAAGATCAGATGCACTACCTCTCCATTGGAATTGGTACAGCTGAGCTAGTCACCTTAATACTATGTTCGTTCCTGATCGATCGCACTGGCAGGAAGTGGCTGATGTCGTTCGGCTACCTTGCCATGGCAGTGCTGATGGGGATTCTCGTGGTGATGCTGTCTTTACAGgatAACTACAGCTGGATTCCATACTTCAACATTGCTCTCATATTCTCTGCAATCTGTGTTTTTGGACTGGGTCCTtctgGAATAACGTTGACCCTCCCTGCTGAGTTGTTCCTTCAGGCTTGGAGACCCTCTGCGTACGTCATTAGTGGCACATGTAACTGGGTCGGTCTGTTCCTCATTGGGATGTTCTTCCCTTACGTAGCGGATGCGATGGGCCGGTTCTGCTTCCTGATCTTTGTGGCCTACTGTGTTCTCAGTGCAGTGTTCATGCTGGTGTTCATTCCTGAAACCAAAGGCAAGACCATGGTAGAAATTATGGAGGACTTCAACAAACTCAATTTTAAGGGCAGGGGGGTGGACACAGAGAAAGCAGATTTGGTCCTCGCCACCAAGCTTTGAGAACATCCaacattattagttttttttttttttttttctacatgcAGGGctaactgaaattaaatgctttttgtcaGGGTGTGAATTCTTAAACATACAAGTACcaatatgtgaaaatgtaaaacctttATCAGTACTGGGAAATCTATTGtaagcactttgtttttgttatagtaatatgctgtatataaccagacatgctttttgtttggttgtgaTTACTGCATTCATCTTTCTTCGGGctagagttttatttttttaaatgtctgaaaatgaaaaggattGTAAATGAGAACTGTACATTCTGAGTatttttgagaaaatatatcaaaGATGTTTTATGGTTCAATGGTCTCATacctgttaaatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149242 lncRNA upstream 44551 22666892 ~ 22667141 (+) True G119071
TU149165 lncRNA upstream 132356 22579051 ~ 22579336 (+) True G119016
TU149164 lncRNA upstream 133979 22577501 ~ 22577713 (+) True G119015
TU149163 lncRNA upstream 134732 22576722 ~ 22576960 (+) True G119014
TU149162 lncRNA upstream 136002 22575459 ~ 22575690 (+) True G119013
TU149282 lncRNA downstream 46126 22765551 ~ 22861808 (+) True G119100
TU149377 lncRNA downstream 259846 22979271 ~ 22982799 (+) True G119177
TU149378 lncRNA downstream 275551 22994976 ~ 22995190 (+) True G119178
TU149439 lncRNA downstream 375141 23094566 ~ 23108600 (+) True G119231
TU149443 lncRNA downstream 390176 23109601 ~ 23111520 (+) True G119234
AMCG00018847 mRNA upstream 18876 22684877 ~ 22692816 (+) True AMCG00018847
AMCG00018837 mRNA upstream 51899 22651139 ~ 22659793 (+) True AMCG00018837
AMCG00018838 mRNA upstream 75641 22630545 ~ 22636051 (+) True AMCG00018838
AMCG00018836 mRNA upstream 84194 22604351 ~ 22627498 (+) True AMCG00018836
AMCG00018832 mRNA upstream 251275 22455239 ~ 22460417 (+) True AMCG00018832
AMCG00018848 mRNA downstream 11303 22730728 ~ 22742264 (+) True AMCG00018848
AMCG00018849 mRNA downstream 24584 22744009 ~ 22752505 (+) True AMCG00018849
AMCG00018846 mRNA downstream 43653 22763078 ~ 22766026 (+) True AMCG00018846
AMCG00018851 mRNA downstream 72852 22792277 ~ 22798365 (+) True AMCG00018851
AMCG00018854 mRNA downstream 80628 22800053 ~ 22807032 (+) True AMCG00018854
TU148883 other upstream 1522446 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 1955472 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 2108377 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 2117553 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 2118676 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 2514657 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 2764872 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 3741195 26460620 ~ 26461227 (+) True G119762

Expression Profile