RNA id: AMCG00018847


Basic Information

Item Value
RNA id AMCG00018847
length 1800
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00018847
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22684877 ~ 22692816 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcaaatttaaaaataagccCTGCTCAGCAAAGATACCTAACAGAGTGTGACAGTGACAGGGAGACAGATACATGGTTTGCTCTCCTCCACCCCTTTCTTCAGATTCAGACTATATAACCACTTGCATGCATCTTGAAACAATTCCCTCTACAATCATTCCTGAAGACAGACAGCCGGTGAAGACAATGGAAGCCACATTGACTGAGCTGATGAATTACTGGAGGCTTATTCTGTTAACTGTCGTGCTAGGAATCGGGGGATCATTTCAATATGGAATTCAAGTGTCTATCATGGCTTCTCCCTCAGAACACATTCAAAACTTTGTGAACCAGACTTGGATGACTCGGTATGAGAAGCCTGTCAGCGAATCCACACAGAAACTCATCTGGTCCTTCATTGTGTCCATCTTCAGCCTGGGGGGCTGGCTGGGTGCTATCAACAGTGGTACAATCCCAGTCATCTACGGCAGAAAGAAATGTCTGCTCTTCAATAACGTGGTGGCGATCGTGGCCGCAGTGCTGATGGGATTCAGTCGCATGGCGGGCTCCTTCGAGATGATATTGCTGGGAAGGATTCTAGAATTGATGGGCACAGAACCTATGTGGCCATACCTGCTGGCACTGAGTGGTCTGCCAGCTGTGGTGCAATTCCTCAGCCTCCTCTGTTTCCCAGAAACACCGCGCTACCTGTACATTGACAAGGGGGATGAGGAGGGATGTAAAAAGGctttaaaggtGCTCTGGGGTAACGTGGAGACGAAGCCGGAGCTGGAGGATATGGCTAAAGAGCGGGAAACGATGAAAGGGGAAAAGGCCAAGTCAGTGTGGGATGTCCTGACATCACGCTCTGTGCGATGGCAGCTGCTGACATTAGTCATCCCCTGTGGTCTTGTCCAGCTCTGTGGAATCAGTGCGTCGTTCCTGATCGATCGCACTGGCAGGAAGTGGCTGATGTCGTTCGGCTACCTTGCCATGGCAGTGCTGATGGGGATTCTTGTGGTGATGCTGTCTTTAAAGgaTAAATACACCTGGATTCCATTCTTCAACATTGCTCTCATTTTCTCTGCAATCTGTGTTTTTGGACTGGGTCCTGctgGAGTGGTGATGACCCTCCCTGCTGATTTGTTCCTTCAGGCTTGGAGACCCTCTGCGTACGTCATTAGTGGCACATGTAACTGGGTCGGTCTGTTCCTCATTGGGATGTTCTTCCCTTATGTAGCGGATGCGATGGGCCAGTTCTGCTTCCTGATCTTTGTGGCCTACTGTGTTCTCAGTGCAGTGTTCATGCTGGTGTTCATTCCTGAAACCAAAGGCAAGACCATGGTAGAAATTATGGAGGACTTCAACAAGCTCAATTTTAAGGGCAgggaggtggacacagagaaaGCAGATTTGGTCCTCGCCACCAAGCTTTGAGAACATCcaacattattattcattattctgttttcttctcCATACAGggctaaattaaatgttttttgtcagGGTGTGAATTCCTAAGACTTGTTTAAACATGCATGTACtgatttgtgaaaatgtaaaacctttATCAGTACTGGGAAATCTATTGTAAGCACTTTATGTTGTAGTAATATGCTGTATATGCTGAATATAACTAgacatgctttttgtttgtgaCAGTTTTCTTGACTGTGATTACTGTATTCATCTTTCTTCAGccaagagatttatttttgaatgactGAAAATGAAAGGGACTGAAAATAAGAACTATGCATTTTTATCAGAATATATATCaaagatgttttattattaaaatacatatctgatttgaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149242 lncRNA upstream 17736 22666892 ~ 22667141 (+) True G119071
TU149165 lncRNA upstream 105541 22579051 ~ 22579336 (+) True G119016
TU149164 lncRNA upstream 107164 22577501 ~ 22577713 (+) True G119015
TU149163 lncRNA upstream 107917 22576722 ~ 22576960 (+) True G119014
TU149162 lncRNA upstream 109187 22575459 ~ 22575690 (+) True G119013
TU149282 lncRNA downstream 72735 22765551 ~ 22861808 (+) True G119100
TU149377 lncRNA downstream 286455 22979271 ~ 22982799 (+) True G119177
TU149378 lncRNA downstream 302160 22994976 ~ 22995190 (+) True G119178
TU149439 lncRNA downstream 401750 23094566 ~ 23108600 (+) True G119231
TU149443 lncRNA downstream 416785 23109601 ~ 23111520 (+) True G119234
AMCG00018837 mRNA upstream 25084 22651139 ~ 22659793 (+) True AMCG00018837
AMCG00018838 mRNA upstream 48826 22630545 ~ 22636051 (+) True AMCG00018838
AMCG00018836 mRNA upstream 57379 22604351 ~ 22627498 (+) True AMCG00018836
AMCG00018832 mRNA upstream 224460 22455239 ~ 22460417 (+) True AMCG00018832
AMCG00018833 mRNA upstream 235548 22440803 ~ 22449329 (+) True AMCG00018833
AMCG00018845 mRNA downstream 18876 22711692 ~ 22719425 (+) True AMCG00018845
AMCG00018848 mRNA downstream 37912 22730728 ~ 22742264 (+) True AMCG00018848
AMCG00018849 mRNA downstream 51193 22744009 ~ 22752505 (+) True AMCG00018849
AMCG00018846 mRNA downstream 70262 22763078 ~ 22766026 (+) True AMCG00018846
AMCG00018851 mRNA downstream 99461 22792277 ~ 22798365 (+) True AMCG00018851
TU148883 other upstream 1495631 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 1928657 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 2081562 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 2090738 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 2091861 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 2541266 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 2791481 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 3767804 26460620 ~ 26461227 (+) True G119762

Expression Profile