RNA id: AMCG00018856


Basic Information

Item Value
RNA id AMCG00018856
length 2335
RNA type mRNA
GC content 0.45
exon number 16
gene id AMCG00018856
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22753967 ~ 22760428 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCACTCCTCTCCACAGCCCCATCCGTGCGCTCTGTCCGACGTCATCAGCGTCACATTTACGTCGCCCCATATCCGCTGACGTCAGTTGTGTACCGTCCGTTGCAGTTTGTTGGCGGGATGTTTAAATTTGCGGACGGGAATAGCAAAGAAAAGCTTGTTGTCTAGTTTTGTGACAGAGCGTGTGTTTGAGGCGCAGGAAGATGAGTCGCGCATCGAGCAGCCGGCAGTCGCTGCTGCCGCTCAGGGTAGCTGACAATGCCCGGATGAACCTGGAAACCCCAAAAAGGACAAGCGGTGCAGGTATGTCCCGTAACAGCACTTTTGGCGCTTTTGGAGGCGCAGAGAAAATGAAGGACCCTCGTCCTCTGCATGACAAGGCCTTTGTCCAGCAGTGCATAAAGCAGCTTTGGGAGTTTTTGTCAGAGAATGGTTTCCCCAACTCTGTGACGATCAAGTCCCTTCAGTCTCCATCCACCAAGGAGTTCCTGAAGATCTTCGCCTTCATCTACAGCTTCTTGGATCCGACTTTCCAGATGCCCACGTCCAAAATTGAAGAAGAGGTTCCCCGAGTTCTTCGAGATTTGGGATATCCATTTGCTCTCTCTAAAAGCTCAATGTACTCCGTTGGAGCACCACACACTTGGCCACAAATACTGGGGTCACTGATCTGGTTAATAGACAATGTAAAGCTCTTTAATAACATGAAGAAGCAAGATTTGCTGTTTGGTGGTTTTTCTGAAGGTAGTGTGGACATTGAGGATGGAGTTGAATTTAATAAGATGTTCATGGAGTACACAGCGAAGACATATGACCGGTTCATGCAAGGCGCCGACACGTTTGAAGAGGAAGATGAGGAATATCGTCAGAAAATAAaaaagatttacaatgtggatgaaagCCACTTGGAAGCAGTGTCTGAAAAACACAGGATTCTGTGTGAAGAGGTCGAAAGACTGGAAAAAGAGAGCCAACAggaCAGACTTATGGCAAAAAGATCTGAAAAATTAAAGTTGCAGACAGATCTGCAGAAAATTCAGAGTTATCGTAATAATCTGGAGATCTTTAAAACCAACTTGGAGCAAAAAGTGGCGTCTGTATCTGAGGAGTTGGAAGGGGCAGAATTGCAAGTGGAAACTTTGAAAAAAGAACAATCCAGGCTGCAGCATGTCCTTGAGAATCAGAAATTTTCACAAGCTGACATTGAGAGAATCAATCATGAAAGAAATGAACTACAGCAGATGATTGCCACCCTGACGAAGAGCCGGGAAGAAGCCGAGCAGCACATGTGGAATGAGGAAATTGCCCTTGCAAAGGCCAAGGAATCTGTGGAAGCAGAACTAGCAGAGTACCACAGACTTGCCCGGAAACTAAAGCTGATTCCTTCATCAGCTTCAAATGCCTGTGGCCGTGACTTTGAAATCAAATTTTCTGCAGAGTGTGGACTATCAAAAATAGGTCAAAACAAAACTCATATTCATattccCCTGATGAATATGATTTCTGAAGTAGAGGAGGAGTTGGGAAGACTGACAAACCATAAATTAAGTCTGGAGGAGACCGTGGAACAGGTGAACTGCAATCTATTTGACAAAGCAAATGATATAAAGCAACTCAAAGAGAAAATACGAAAAGAGACAGAGCGAGAAGAGGAGAAATGGGCCTCGGAGCTGGAGTCAATGGAGGACCACAGGAAGCGTCTGCAGAAGAAAGTCACTGAGGGCTACGATGAGGCAGCAGAGCAGTTAAAAGCAGCTCAGCAAGAGTACCATCTAGTATTACAGGAGACTAATGAGGAGCGCAGAACTGTGGGGACAAACCTGAGTAATGTTTTGGACATCGCAACCAACCACCTGTCAATCCTGGATAAACTCCTTCAAGAGCACAGCAGTAGGGTTGACCGAGACTATAGGGAAACTATCCAGGAAGATGAGCTGAAGGATCTTATGGAGACTGTTGAAGCATACATTGCAAAAGCAAAATCTTTATAATTCTGCCATAAGCAGCGGTATTCCCTGTCATttaagtctgtgtgtgtttgcagtacTTTGCATTGTTGTATTTTCCTTGTTTCAATAAAGAACTTTGAAATGTTGTATATAGTTGGATACTGGGAGTAACATGCAGATTGTAAATGCTATTTACACAGGTGCAAATTTTTGTCCATGACTACATTGAAAGCCTATTCCAATTAACCAAacgttatttatttcttagcagacacccttgtccaatAGTTGCTCTGGATATCACCCAAGACTGTTACTGAACAGTTCGTGTAGCATTCCTCCAGACCTCGTTGCTAGAGGTGGGGCATAATTCCAGCTGGCGGGCAG

Function

GO: NA

KEGG:

id description
K11547 NDC80, HEC1, TID3; kinetochore protein NDC80

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149243 lncRNA downstream 86757 22666929 ~ 22667210 (-) True G119072
TU149241 lncRNA downstream 89868 22663833 ~ 22664099 (-) True G119070
TU149209 lncRNA downstream 123842 22627545 ~ 22630125 (-) True G119048
TU149088 lncRNA downstream 600253 22151354 ~ 22153714 (-) True G118947
TU149015 lncRNA downstream 1035164 21703302 ~ 21718803 (-) True G118892
TU149317 lncRNA upstream 1932 22762360 ~ 22766026 (-) True G119128
TU149321 lncRNA upstream 74331 22834759 ~ 22857679 (-) True G119129
TU149380 lncRNA upstream 222438 22982866 ~ 22983566 (-) True G119180
TU149381 lncRNA upstream 223756 22984184 ~ 22984772 (-) True G119181
TU149444 lncRNA upstream 349173 23109601 ~ 23111520 (-) True G119235
AMCG00018844 mRNA downstream 108600 22637693 ~ 22645367 (-) True AMCG00018844
AMCG00018843 mRNA downstream 163643 22588552 ~ 22590324 (-) True AMCG00018843
AMCG00018842 mRNA downstream 167931 22584167 ~ 22586036 (-) True AMCG00018842
AMCG00018841 mRNA downstream 171128 22561021 ~ 22582839 (-) True AMCG00018841
AMCG00018839 mRNA downstream 216648 22498019 ~ 22537319 (-) True AMCG00018839
AMCG00018861 mRNA upstream 7033 22767461 ~ 22768061 (-) True AMCG00018861
AMCG00018859 mRNA upstream 11008 22771436 ~ 22790973 (-) True AMCG00018859
AMCG00018860 mRNA upstream 49057 22809485 ~ 22821646 (-) True AMCG00018860
AMCG00018857 mRNA upstream 79104 22839532 ~ 22850722 (-) True AMCG00018857
AMCG00018855 mRNA upstream 100663 22861091 ~ 22862779 (-) True AMCG00018855
TU149076 other downstream 640272 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 2056140 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2148147 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 2148147 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 2263229 20490211 ~ 20490738 (-) False AMCG00018790
TU149337 other upstream 43917 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 2314970 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2374343 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2425779 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 4053052 26813480 ~ 26814073 (-) True G119827

Expression Profile