RNA id: AMCG00018858


Basic Information

Item Value
RNA id AMCG00018858
length 1155
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00018858
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22871159 ~ 22875760 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGCGTCCCATTTTGAATCGCTGGAGAAGAGCCTGGACCAGCACATCCCCCCCGAGGAGCTGAAGGAAGTCAAGCGGATCCTCTTCGGCAAAGACCTCAAGAAAATTGACTTTCCACAGAGCGCCATTGCAGCCGCAGCAGAAAGGGACTTTGAGCTTCAGGGCTATGTGTTTGAAGCTGTGCCGGAGCAGTTAAGGCAGCCTCACAATGTCAGTGTGGGCCTCATTCAAAACCGCATCGTCCTGCCCACCGATGCCCCAGTTATAGACCAGATCACTGCCCTCCACAAGCGGATAGGAGAGATTGTCGAGGTGGCGTCCATGTGTGGCGTCAATATCATGTGCTTTCAGGAAGCCTGGACGATGCCCTTCGCCTTCTGTACCCGGGAGAAGGTGCCGTGGACGGAATTCGCCGAGTCTGCTGAGGAGGGCTATACCACCCGCTTCTGCCAGGAGCTGGCCAAGAAGTACAACATGGTGGTGGTGTCCCCGATTCTGGAGCGAGATGAGGTCCACGGTGGAACGCTGTGGAACACTGCTGTCGTCGTGTCCAACTCGGGGGCTGTGCTTGGGAAGACCCGCAAGAACCACATTCCCAGGGTTGGGGATTTCAATGAGTCTACTTATTACATGGAAGGAAACACAGGACACCAAGTGTTTCAGACCCAATTTGGACGGATTGCAGTGAATATCTGCTATGGGCGACATCATCCTCTCAACTGGTTCATGTACAGCATGAACGGTGCAGAGATCATCTTCAACCCCTCTGCCACTGTTGGCGAGCTCAGTGAGCCCATGTGGTCCATTGAAGCCCGAAACGCAGCCATTGCCAACCATTGCTTTACCTGTGCCATCAACAGAGTAGGAACGgAGCATTTTAAGAATGAGTTTACTTCTGGTGATGGAAAGAAAGCACACTGTGATTTTGGCTATTTCTATGGCTCGAGCTATGTAGCTGCCCCCAATGGCAGTCGGACGCCGGGTCTGTCCCGCACTCGAGACGGGCTGCTGGTGACCGAGCTGGATCTGAACTTGAATAGGCAGGTCAGCGATCAGTGGAGTTTCAAGatgACAGGCAGATACGAGATGTACGCAGAGGCGCTCGACAAGGCTGTCCAGCACGACTTCAAACCCAGCATCGTCAAAGAGTGA

Function

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0003837 beta-ureidopropionase activity molecular_function

KEGG:

id description
K01431 UPB1, pydC; beta-ureidopropionase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149321 lncRNA downstream 13480 22834759 ~ 22857679 (-) True G119129
TU149317 lncRNA downstream 105133 22762360 ~ 22766026 (-) True G119128
TU149243 lncRNA downstream 203949 22666929 ~ 22667210 (-) True G119072
TU149241 lncRNA downstream 207060 22663833 ~ 22664099 (-) True G119070
TU149209 lncRNA downstream 241034 22627545 ~ 22630125 (-) True G119048
TU149380 lncRNA upstream 107106 22982866 ~ 22983566 (-) True G119180
TU149381 lncRNA upstream 108424 22984184 ~ 22984772 (-) True G119181
TU149444 lncRNA upstream 233841 23109601 ~ 23111520 (-) True G119235
TU149635 lncRNA upstream 1643653 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 1690386 24566146 ~ 24568299 (-) True G119384
AMCG00018855 mRNA downstream 8380 22861091 ~ 22862779 (-) True AMCG00018855
AMCG00018857 mRNA downstream 20437 22839532 ~ 22850722 (-) True AMCG00018857
AMCG00018860 mRNA downstream 49513 22809485 ~ 22821646 (-) True AMCG00018860
AMCG00018859 mRNA downstream 80186 22771436 ~ 22790973 (-) True AMCG00018859
AMCG00018861 mRNA downstream 103098 22767461 ~ 22768061 (-) True AMCG00018861
AMCG00018863 mRNA upstream 901 22876661 ~ 22887044 (-) True AMCG00018863
AMCG00018862 mRNA upstream 23792 22899552 ~ 22927435 (-) True AMCG00018862
AMCG00018867 mRNA upstream 111465 22987225 ~ 22993237 (-) True AMCG00018867
AMCG00018868 mRNA upstream 122875 22998635 ~ 23011253 (-) True AMCG00018868
AMCG00018866 mRNA upstream 136662 23012422 ~ 23032810 (-) True AMCG00018866
TU149337 other downstream 64821 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 757464 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 2173332 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2265339 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 2199638 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2259011 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2310447 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 3937720 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 4355113 27230873 ~ 27242574 (-) True G119893

Expression Profile