RNA id: AMCG00018859


Basic Information

Item Value
RNA id AMCG00018859
length 5295
RNA type mRNA
GC content 0.50
exon number 37
gene id AMCG00018859
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22771436 ~ 22790973 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGAGTCTGCGGCGGGCAATGCCGAGTCGGCACCACTGTACTGGAAAACAGATAATCAAACTGTTCACCAGGCTGATGGCAGCAGGTCTTTTAACTTTGACAGAGTTTTTAGTGTCCATGAAACAACAGATCAAGTTTATCAAGAAGTTGCAAAGCCCCTTGTGGATTCTGCCATCAAGGGCTACAATGGTACAATCTTTGCATATGGACAGACCTCATCGGGAAAGACTTTCACAATGATGGGGAACAAGGACTCTGTGGGAGTCCTACCTCTGGCCATTCAAGACATATTCAAGACTATTTCGGTGACTTCCAACATGGAATTTCTTCTGCGTGTGTCCTATATGGAAATCTACAATGAGACGGTCACTGATCTGCTGTGTGACAGCCTCAAAAGGAAGCCATTGGAAATCCGAGAGGGCACAAATAGAAATGTTTATGTAGCTGATCTCACTGAGGAGGTGGTTGTATCTGCCAAACAAGTCCTGGAATGGATCAAAAAAGGAGAAAAAAATCGACATTACGGAGAGACCAAGATGAATCAGCGCAGTAGTCGGTCTCACACAATTTTCCGAATGATTTTGGAAAGTCGTGAAAAATGCGATACACCTGGCGCAGAACTTCAGGACATGGCGGTTATGGTGTCCCATTTGAACCTGGTTGACTTGGCTGGGAGTGAAAGAGCTAGCCAAACAGGAGCTGAAGGGCTGAGACTGAAAGAAGGGTGCAACATTAACCGGAGCTTGTTTACTTTGGGCCAAGTTATCAAAAAACTGACTGATGGGAATCCTGGGGGCTTTACAAATTACAGAGATAGTAAACTCACCAGGATTCTCCAAAACTCCCTCGGTGGCAATGCCAAAACAGTGATCATATGCACCATTACTCCGGCCACTATTGAGGAGACCCTTAGCACCCTTCAGTTTGCCAGCACAGCCAAACATATGAAGAACGACCCTCATGTGAACGAGGTTCTGGATGACGGCGCGCTAATGAGGAGATACAGAAACGAGATTGTGGATCTCAAGAGACGTCTCGAGGAAGTTTCCTCTGAGACACGGGTACAGGCCACCGAAAAGGAGGTTCTGGCCCAGCTGCTACAGGAGAAAGACCAGTTACAGCGAGAACAGGAGGATCGCATCAAGAACTTAACAATGATCTTGGTTACCTCCTCCAGTTTCGTAGTGAACGACATGAAGatgcGAAACAAGAGGAGAGTTACTTGGGGTGGCAAACTCCTGCGGGGTATGACGTCCGAAGGATTTAATTTCAGCGACCGTGGATTTCCAGAACATtctcttaaaagaaagaaagcagatTTATCGTCAGTAATCGAACAAGATGACTCTGAAATGTTAGATTTTGATGGAGATGACACTTGGCAGCAGACTATAGATGATCTCCCCTTGGAAATGGATTCATATATGAGCAACGTCTCTGTGCGCAGAAGCAGGAACACTCCGTCTGTCTTATCAGATGTTTCGTCTTCCTCCTCGTCTCCTTCCGATAGCGGTTTTTATTCTCTGGTTCACGTGAACGAACTGAAGGAGAAGGTGGCGAGTTTGGAGCAGCAGTTGCAGAAGGAAACCCAGGAGAAACTGGAAGCCGTAGAGAAGGGCAGCATGCTGGAGAGGAAGGTGATGGAGTTGGAAGAGCGTGTGGAGGTCACCTTTAAACCACCGGCCCAGGAGCCTGTGGATGAAGATATCCAGACAGAGACGTACAGCCAGGCAGCCTATCAGACTTATGAAACCGAGTTCAGGGAAACGATGCAGCTCTGTGAAACACTGGTGACTGAGAAGGAGGTCATCCAGGCAGAGAGGAACATCCTTAAAGAAGAATTTGACCGCTTGAGGAAGGCGAACGAGGTCTTGGAGCAGGAAAAGAAGCGTCTCCAGAATGAGATTGCAGAGAAAGAGGAGCTCAGTGAGTTCAAAACTTTTGAAGAGGAGAGCAACAAACTATATGAGACTGAATTAATGAGTGAAATCAGCAGCTTAAAGAAGGAGATTGAGAGCGCTGGCATGTGCATCGAAAATCTGAAGGCTGAGCTTGAAATGAAGTCAAATGAACTGCAGAAGAAGGAAGACTGGATTTCAGAGATGCAGAATCTGGGCGGTAAGGACTTGATGGTAGAGATCCAACAGCTAAAGCACTCCCTGGGAGACGCAGAGACTGTGAATCTTGACACTAAGAAAGAGTGGGCCTTCCTTCGCAGTGAGAACCTTGCCCTCAAGGAGAAAGATGTTGAAATCACAGCCAAGTACCAGCAGATGGAGACTGATGTGCAGAGGCTACAGAGCCAGTTAGAGTCCGAGAAGAAACGCTTCAAAACGATGCAGGTGGACCTGCAAAAAGAGCTGCAGATTGCTTTTGAAGAAAACACCAAGCTGACCACCCTCCTGGATGGAAAGGTCCCCAAAAATCTGATTGAGCGTTTTGAACTGGAACAAAAAGTTGCTGGGCTCCAAAAACAGCTGGAAAAATCCTTGGAAGGGGAAAGAACATTGCATGCAGAGATTGAGGCCCTGTCTGAGCTCAAGCACCTCCCTGAGAAGGTTGATGACTTGATGAAAAAGATCTGCGAGATTTCTAACGAGCTCTGTGCCATACAGTCTGAGAGGGATGCTCTTCTCTCCACAAAGGCAGAAATTGATGTGGAGATACGAGAGCTGACGGAGGCCAAACTGCAAGCTGCTGCCAATCTCATTGAAGTTCTCTCCAAGCTAGAGAAGACTGAGCAGAAGATGACAGACTTGTCTCAACAGCATGACTCAGCACAGAAGCAATGCCTGGCTATGTCTGAGGAGTGTGAGAAACTCAAAGCTGAGCTAGAGAACGTGTCTGCAGATAAAGAGCAACTGCTAAACAGACTGGAAGACCTAAGCTTGCAgGTTGTGAACACTGAAGAGCAGCAAAGAGTAACTGAAGAAAAGCTGTTGGAACAGGAACAGCTGCTGAAAGACTCTGAGAGCACACTCGCAGAAAGGGAGGAGGCCTCTAGGCATGAAATGACACACATTGAAGAGACTATAAAGCAACTAGAAACCCAGGTTCTCACCATTTCTGAGGAGCTGAAGGTGGTGAACAGTGAGAGGGACGCCCTCCTGTCTGACAGGAGAGACTCTGCTCAGAGTCCAGATGCTGAGCTGCAGGAGCTGCGGACACGCATCAAATCCCTCACGGAGGAGAGAGACCAGCTGCAGGAGATACTGGAGGGAGTCCGAGCCGAGAAGAACCAGCTGAAGGCCGACCTGGAGGAGAATGTGGAGATGGTTATTGAGACCCAGCAAGACATTTGCAGTGTCAAGGAGGAGCTCAAACTGCAAGAACAGCTGGTTGCTGAGCTCAAAGACCAGAGTACTGAGAGAGAAGCTCGACTGGAACACCAGATAAATGAGTTGACTGCAGAGCTGAAGGTGGTGAACAGTGAGAGGGACGTCCTCCTGTCTGAGAGGAGAGACTCTGCTCAGAGTCCAGACGCTGAGCTGCAGGAGCTGCACACACGCATCACATCACTCACGGAGGAGAGAGACCAGCTGCAGGAGATACTGGAGGGAGTTCGAGCCGAGAAGAACCAGCTGAAGGCCGACCTGGAGGATAATGTGGAGATGATAAATGAGTTGACTTCAGAGCTGAAGGTGGTGACCAGTGAGAGGGACGCCCTCCTGTCTGAGAGGAGAAACTCTGCTCAGAGTCCAGACGCTgagctgcaggagctgcagACACACATCACATCGCTCACGGAGGAGAGAGATCAGTTGCAGGAGATACTGGAGGGAGTCCGAGCCGAGAAGAACCAGCTGAAGGCCGACCTGGAGGAGAATGTGGAGATGGTTCTCGCCATTTCTGAGGAGCTGAAGATGGTGACCAGTGAGAGGGATGCCCTCCTGTCTGAGATGAGAGACTCTGCTCAGAGTCCAGATGCTGAGCTGCTGGAGCTGCGGTCACAGATCACATCCCTcatggaggagagagaccagCTGCAGGAGATACTGGAGGGAGTTCGAGCTGAGAAGAACCAGCTGAAAGCCGACCTGGAGGAGAATGTGGAGATGGCTGTGGAGACTCAAAGTGACCTTCGCTGTGCCCAAGAGGAGCTCAAAAAGCATCAGCAACTGATGTCTGACCTCAAGATCCAGAAAACAGAGCAAGAAGCTCACCTGGAGCAAAAAGTGACTGTATTGACTGAGGAGCTGAAGGTGGTGACTAGTGAGAGGGACAGCCTCCTGTCTGAGAGCAGAGACTCTGTTCAGAGTCAAGATACTGAACTACAGGAGCTGCGGACACGCATCGCATCCCTCACCCAGGAGACAGACCAGCTGAAGGAGATACTCGAGGCAGTCCGAGCTGAGAAGAACCATTTGAGGATGGATCTGGAGGAGAATGTAGAGATGATGCAGGTGAAGTTGCAACAAGCCCAGGATGAACTGAAAGAAAAGCTTCAGGAGGTTGAGGAGCTCAGAGGCCTGGTAGCAGATAAAGAACTCCAGATCAGCAGCATCCAGCAGACCCAGGCAGTGGAGGCAAGTTATATTCATGGCATGTTTACAAATCAACATGAAGAAAAGCTGAAACACGCCCAAGAGCAACTGACGGACAAGCAGCAACAGATTTCTGACCTGAGAGCCCAAGTAGCAGCGAAGGAGGCCGAGCTGTTGGGCCTGCGTCAGGAGCTCAGTCACACTGTGGCTGAACATGACCTGCAGAGGCAAGAACATGAGTCTGTGGTTCAGGAGCGGTGCCATCTGGAAGAAGAGCTGAAGGCCAAGATGGCACAGTTGCAGGAGACTGAGATCTCCCTGCAGGAGCTCAGGGGAGAGCTGGCCGGCCTCGTGCAGGAGAGGGACCAGCTTCACGAAGGCCTGAAACGACTCCAAGATGATATCAAGGCAGAAAAAATgaagagtgagagtttaatTGCTGAGGCAATCAAGGAGAAACAGGCACTTTCCGACAAGATAAGCAGCCTGAAAGAGGAGATTGTTTACCTTGAGCGTAAGTGCGAGCTCTCGGTGGGGAAGGAGAAGCTGTCTCAGCGTCTGGAGGAATCTGAACAAGAGCACCAGGAATCTCTGAAGAAGTTCCAGGTGCTGATTGACAAGTTTGATAGTCGGGCCAAGAACATCAGCACTCTGCTGAAAAAGGACGTTGGTTCACAGAACAAACTGGTGCATCAGCTCGTCTCCTCCCTGCCTCGGGATCAGTCCAAACCCATGCTGACACTCAACTCTGACATCGGGGACAAGAACAGTGAGCTTGTTTTGAGACTGAGGCAGCAGGTGAACATGGCC

Function

GO: NA

KEGG:

id description
K11498 CENPE; centromeric protein E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149317 lncRNA downstream 5410 22762360 ~ 22766026 (-) True G119128
TU149243 lncRNA downstream 104226 22666929 ~ 22667210 (-) True G119072
TU149241 lncRNA downstream 107337 22663833 ~ 22664099 (-) True G119070
TU149209 lncRNA downstream 141311 22627545 ~ 22630125 (-) True G119048
TU149088 lncRNA downstream 617722 22151354 ~ 22153714 (-) True G118947
TU149321 lncRNA upstream 43786 22834759 ~ 22857679 (-) True G119129
TU149380 lncRNA upstream 191893 22982866 ~ 22983566 (-) True G119180
TU149381 lncRNA upstream 193211 22984184 ~ 22984772 (-) True G119181
TU149444 lncRNA upstream 318628 23109601 ~ 23111520 (-) True G119235
TU149635 lncRNA upstream 1728440 24519413 ~ 24608462 (-) True G119382
AMCG00018861 mRNA downstream 3375 22767461 ~ 22768061 (-) True AMCG00018861
AMCG00018856 mRNA downstream 11008 22753967 ~ 22760428 (-) True AMCG00018856
AMCG00018844 mRNA downstream 126069 22637693 ~ 22645367 (-) True AMCG00018844
AMCG00018843 mRNA downstream 181112 22588552 ~ 22590324 (-) True AMCG00018843
AMCG00018842 mRNA downstream 185400 22584167 ~ 22586036 (-) True AMCG00018842
AMCG00018860 mRNA upstream 18512 22809485 ~ 22821646 (-) True AMCG00018860
AMCG00018857 mRNA upstream 48559 22839532 ~ 22850722 (-) True AMCG00018857
AMCG00018855 mRNA upstream 70118 22861091 ~ 22862779 (-) True AMCG00018855
AMCG00018858 mRNA upstream 80186 22871159 ~ 22875760 (-) True AMCG00018858
AMCG00018863 mRNA upstream 85688 22876661 ~ 22887044 (-) True AMCG00018863
TU149076 other downstream 657741 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 2073609 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2165616 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 2165616 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 2280698 20490211 ~ 20490738 (-) False AMCG00018790
TU149337 other upstream 13372 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 2284425 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2343798 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2395234 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 4022507 26813480 ~ 26814073 (-) True G119827

Expression Profile