RNA id: AMCG00018862


Basic Information

Item Value
RNA id AMCG00018862
length 3493
RNA type mRNA
GC content 0.49
exon number 20
gene id AMCG00018862
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22899552 ~ 22927435 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAAGGGAGAGCCAGAGATAAAGAGCTACTCTTGGAGGGAGAAGCCAGATTATATCCCCACTGGCTTGTCAGGGGCAATCTGAAATTGGTTTTGTATTGTGTCTCCTGGCTGCTACAGGGAGCTCCGCCAACGTCTACCTGCAAAGGAATTACATGCGGCTAGGGTTTTCTCGGCTCGGTCCAGAAGTAGTTCGCTCCTTCGCGCCGGCCCCGTGAACAGCTCCGCTCACCAAAACTCATCTTCATCAGCTGATCAGCAGGCCCAGCCATGACGGACACCGTGTTCGGGAGCAGCTCTGAACGGTGGGTCTGTCCCAATGACAGGCAGCTGACGCTCCGCTCCAAGTAAGAGCAGCCAATTGGTACTGGCTGGTCAGTGCATTCAAACCAGACGGAGACGCACCAGAAGAAAGAAGATCTGACCGATGAGGAGAAAGAGATTATCAACAGAGTGATCGCCAGGGCCGAAAAGATGGAGGCCTTGGAGCAAGAGCGCATTGGGAGACTGGTGAACCGCTTGGACGACATGCGTAAGACCGCATGTGGCGATGGTGTGTCTCGCTGCGTGCTTTGCGGAGAACAGTTGGGCATGCTGGCAGCTGCCTCGGTGGTGTGTGAGGATTGTAAGAAGCATGTGTGCACAAAATGCGGCGTTGAGAGCAACAGCCGACCCCGTTCAGTGTGGCTCTGCAAGATCTGCAGTGAGCAGAGAGAGGTCTGGAAGCGTTCTGGCGCCTGGTTCTTCAAGGGCTTGCCAAAGCAGTTCTTGCCCTCTCCCATGCCCATCACCAAGCACAAAGAGCCCAGCACCCAGAGGGAGGCCAGCTCTGCGGAGCCTCATAGCCAGGACCAGCGGGCCACCAGCTATATGAAAGCACAGGGCCGAGGGCAAGTAGAGAATCAGGCCCCAAGCACAGAGCAGGCTGTCACCGAGGCAGAAAGCACCAGCAGAGGGAGCTATCCTCCAGTGAGCCGCAAGCCATCCGAAGCGCGAATGGCTCCCAGCAGCAGTGAGAGCCGGGAGTACTACAATGAGGGTGACAGCGAGGTCAACAGGAGCCCAACAGCTGTGAAGAGAGCTAACTCAGTCCAGGCTTCCAGACCCCCTCCGACCTCTGCACAGATGGCACAGCAAGGTGGCAGAGCAGCGCAGAACCCTCCATCGCGATACCCTGAACAAAAGCAAGGAGTACAGCCTGTGTCGGCAGGACAGATGGACAGTGGATACTCCACTGCCacccagagagaggagaggactGCTGTCCCAGCCAAGGATGAGAGGAGGCAGCCAGCAGCCTACAGCAACCCCCTGGCCCGACACCAGCAGCCCCCACcagaggaggatgaggaagaggCTAACAGCTATGACTCCGACGAAGCCACCACCCTGGGAGCTCTGGAATTCAGCCTTTTATACGAACAAGAAAATAGCTCCTTACACTGTACCATCATCAGAGCAAAGGGTTTGAAGCCAATGGATTCCAACGGGCTTGCAGATCCATATGTCAAGATTCATCTGTTGCCTGGAGCCAGTAAGTCAAACAAGCTGCGCACCAAGACTCTGAGGAACACCAGAAACCCAGCGTGGAATGAGACTCTGGTTTACCACGGCATTACCGACGAGGACATGCAGAGGAAGACACTGAGGATCTCTGTCTGTGATGAAGATAAATTTGGACACAATGAGTTCATCGGGGAGACCCGCGTGTCCCTTAAGAAACTGAAGATCAACCAGAAGAAGAACTTCAATGTGTGTCTGGAGAGAGTTGTTCCGATGAAGCGGGCTGGAACTGCGGGGTCTGTGCGTGGCATGGCTCTCTACGAGGAGGAGGCGAAGGAGGGTGGAGACGTGGAGGAGCGTGGGCGTATCCTGGTGTCGCTCATGTACAACACCCAGCAGGGCAGGCTGATCGTGGGGATCGTGCGCTGCGTGCACCTGGCAGCTATGGACGCCAACGGCTATTCTGACCCCTTCGTCAAAATCTGCCTAAAGCCAGACATGGGGAAGAAAGCCAAAAATAAGACCCAAATTAAGAAGAAGACCCTAAATCCTGAATTCAATGAGGAATTCTATTATGAAATCAAACACAGCGAGCTGGCGAAGAAGTCTCTTGACATCTCAGTGTGGGATTATGACATTGGAAAGTCTAATGATTACATTGGCGGCTGCCAGTTGGGCATCACAGCTAAAGGGGAGCGGCTGAAGCACTGGTACGAATGCCTGAAGAACAAAGACAAGAAGATCGAGCGCTGGCACACCCTACTGAATGAGAACCATGTCTCCAGTGACTAGAAGCCCCCGCATGCCTCCTCTTTGCATTCTCCAaattctttgtgttgttttcttgtcttccagcacgCTGGCTAACGCTTCTGTCTGCTCAGGCCTTTTCCATCTGCTGTTGGCTTCCTACATGCTTGATGAACACCACctctaccaccaccaccaccacttaTACTGTTCATGTTGCTACCAGAGAAACTGTTTGTCTtccatgtgttttaaaaagtctGCCCCCTGCAGGCGTGGCAGAGCTCACGTACGGATGATGTGTGGTGTGACGCGAAAGGTTGCGGCTCGTACTTTTAAGAAAGGTTGagtaaaaatgctttcaccCTACTTTTGTGCGATCTAAAGTATAGCCACAGATTTTATCTTCTATTTTCAGGTTATttccatctttaaataaaatagagagGGAGAagcattgcatttaataataacttttaacACATTCAATTGTCCATTCAGCTGTTGTCGGtttctgtttgatttttaaaggtTTACCCTTTGCCATTAATATgcacattattgttttattaacacaCAAATTCCCTAGTATAGTTTGACCTGACATCTCAGCTGAGCGATATTTCTTAGTATCCTGTACTCTGTAGTAGGACTACAGCTCCAGCTAATTGCAAGtggttaaaatatgtttatctgTATATCTCAAAGGATGGCTAGGATATACAGTTTTGTATGCAGTTGGTATGCAAATACCTTATTTATAGTGCTGGccaaataatacagaaaacatgcaGGAGCTGGAAAATAAACAGGGGcaaagcatgatgggatgtgAAATGGTCAGAAATAAGGCTGATTCACCAATGTTCAGAGTATGAATTTTGTAAGGAGCATTCCACCATTTCCCTCAGCTGGGTATAATGTAGAATAAGAGCATCTATTGCTAgtgtactttatattttaatgttcaaTCCACACCACCGTGGATGTGGTGGgcagaaatgtaaatgcagaATTTGAAGCTTGCTGGACTTGGAGTGGAACAGAAATCGGTACAGTTGGGCAAATTCTAATGAAAGCTTTTACTCAgttactgtgtgtttttattttattttattttattttattttattttaatggtacTGAAGGGACAAATACTAttcagatgtttatttatttattgattgattagttatcttttctccttttgtaaaaaaaaaaaaaaaaaaaaagacaaaaaaa

Function

GO: NA

KEGG:

id description
K19938 RPH3A; rabphilin-3A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149321 lncRNA downstream 41873 22834759 ~ 22857679 (-) True G119129
TU149317 lncRNA downstream 133526 22762360 ~ 22766026 (-) True G119128
TU149243 lncRNA downstream 232342 22666929 ~ 22667210 (-) True G119072
TU149241 lncRNA downstream 235453 22663833 ~ 22664099 (-) True G119070
TU149209 lncRNA downstream 269427 22627545 ~ 22630125 (-) True G119048
TU149380 lncRNA upstream 55431 22982866 ~ 22983566 (-) True G119180
TU149381 lncRNA upstream 56749 22984184 ~ 22984772 (-) True G119181
TU149444 lncRNA upstream 182166 23109601 ~ 23111520 (-) True G119235
TU149635 lncRNA upstream 1591978 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 1638711 24566146 ~ 24568299 (-) True G119384
AMCG00018863 mRNA downstream 12508 22876661 ~ 22887044 (-) True AMCG00018863
AMCG00018858 mRNA downstream 23792 22871159 ~ 22875760 (-) True AMCG00018858
AMCG00018855 mRNA downstream 36773 22861091 ~ 22862779 (-) True AMCG00018855
AMCG00018857 mRNA downstream 48830 22839532 ~ 22850722 (-) True AMCG00018857
AMCG00018860 mRNA downstream 77906 22809485 ~ 22821646 (-) True AMCG00018860
AMCG00018867 mRNA upstream 59790 22987225 ~ 22993237 (-) True AMCG00018867
AMCG00018868 mRNA upstream 71200 22998635 ~ 23011253 (-) True AMCG00018868
AMCG00018866 mRNA upstream 84987 23012422 ~ 23032810 (-) True AMCG00018866
AMCG00018864 mRNA upstream 106934 23034369 ~ 23047483 (-) True AMCG00018864
AMCG00018865 mRNA upstream 128885 23056320 ~ 23083052 (-) True AMCG00018865
TU149337 other downstream 93214 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 785857 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 2201725 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2293732 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 2147963 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2207336 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2258772 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 3886045 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 4303438 27230873 ~ 27242574 (-) True G119893

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) LOC110536803 True 1896 mRNA 0.46 10 NC_048576.1 17325584 ~ 17343437 (+)