RNA id: AMCG00018864


Basic Information

Item Value
RNA id AMCG00018864
length 3009
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00018864
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 23034369 ~ 23047483 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAGAATTGATAGCACCGAGACAGCCAGTGGTTTTGCAGCCCGAAGGAGGCAGGCGTTTGGAGAAAGCTGCGGACCGGAGCGCACAGCGTTTGCGCCGTTTCCAAACCTGGCTCAGTGCGCCAGAGGCTCCAGGCTTGGGCAGGACACGCTTATACAGCAGTCGGGGAATTGGCACTTTCCTGGACTGTCATGCGAGAGgaacattcaatatttgtaaatctAGATCAACACATCTGGACGGGAAAGGCTGTggtggaacaaaacaaaaacctttttaaaaacaagaattgCTGCGTAAGTGCGCACTGAACGTCTCCAATGCGGCGATACATACATCTAACCAGGGAGATGGACATTTCTATTCAAAATTTAACGGCACTGGCCCATGACTGGACTGCGATTCGCCCGCTGTTCTACCTGAGCATCACAGACCTGCTGCTGGGAGTGAGCTGGCTGATAGGGGCCATTCTCTACAGAGAGCCCTTCCACAGTCAGAACATCGCCTGCTACAACCTGCAGTCCATCGGACAGgtattttatgtgTCGTCCTTTTTCTACACCATAAACTACACCTGGGTCCTGTACACTGGCTTAAAGGAGAAGTACAGCAGGAAATTAAGTGGATATTCTGCACTGTATTCGGAACAAGCCTATAGAATCAACAAAATTGCCGCAGTGCTATCAAGCGTGGTTCCTGTGCTGCTCATCGCTCCCGTTTTCTACGTTGGCAATTCAGCAGAATGCTATTGGAACTTCACGCAGCCTTACAAATGTCTGTTGATGCACACCGGGGACCTCAATCCACCCACAGGCTACAATGAATCCAACACAACGTCCTGCCACGTCCTGCACTACTACAGCACAGGGGTCTTCCTGCTCGCCTTCCTCTTCACCCTCGTAGGGATTGTGGTGCTCATGGCAAAGGCCTGCTCTCTCTACAAACGCGTTGTGAACTCCAGCGGGTTTCTGGGCGACCAGCAGTGGGCCAACATTACCGTGTTGGAGCGGCGAGTCTTCCTCTACCCTTTggccttcttcttctgctgggGCCCAGCTATTCTTCTGGCTGTAATGAAGATATTCAACCCAAGAGGACAGGAGAATCTCTATGTTGCCCTTTACATCTTACAGGCTCTCACGTCGGCCTCGCAGGGGCTGCTGAACTGCGTGGTGTATGGTTGGACACAGCAGATGTTCCACTTCATGAAGACGAGCACCCGCCGAGACATGGACACGCAGACCCCCTTACTGCGCTCGCAGAAGAAGAGCTACGCAACCCTGCACACTGCGAGCtcaagcacaagcacaagcacaagcacaagcacaagcactGCCCACTAGACTGCTACACAAGGACACCAGAGCGAGAAATTCCCAACCACATAGGTGGCCAATAAGCTTCTGGCCAAAACTTTCTAGTAGTGCTGCATGGATGAAGCAATGATAAAGCGACAGGCtgcaaaatactgtacatgtattatttcttaaGATCCTTTTCTTCCTCATTAGAAAAGGGAAACACCTGAAGATTGCGATACTCAGAGGAATTTCTGGTTTTAAAGTCAGGTGACTTTCTGAGGTCTCCTCCCTACCCGAAGCAAAGTGGAATTTTTCTGACGAGGTCATTGCCACAAGCCTGGCTTGTCTCCTTcagacagacaaagacatgtatttaattgctCATTCTAACGGCTACTTCTCTCGTTGTGTTTATtcaaaaatgtcagtgtttgaCAACAAACAAGACCCTACATATGTTTAAAGACAttgagaagggaaaaaagttttcttCAATTACTTAGGATAAATATGTCAGAACAGCTGGTTCTATACCACAAATGTGATCCACAAACTCTGATCCATTTCAATGAAATATGGAATATTTGCATTCCATCAGGAACCAGAGAGACTGCAACACTGTCCAGCTTCAGCAGTGCCTGGCCTATGAAAGAATTTGCCAAAAAACAGGTGTTTGGAGCTGCAGTGTGGGTGTATTTCTACTTCCATTCATTCACGGGACACTAGTAAAACGACATCACCTCAGACAATCACACTAAACCCTGCTAAGAAGAGGAAACCTGTGCAACTGTGCAAGTCTAAGTCAAGTGGGAAGGCTCACCCAGCGGCCTCATGGGCAAGACGTGTCACCCCCTCTCCCAGCCCTTTTCAACAGGGTGTATGTGATCAGAGAGTATGATTAAAGACCCGTAGGTGCAAGGATAATGTTTATGTGCATTGAGCTTTGTAGCTAAGCTGCTTGTTTTACTGCATTGAATGTTTTCACTTGTTTGTAGTAATGAGTGGGATATTGCCTCTTTGACAAAGGAAAAATGATTTACTTTCCTACCTAGATTTAGTACTGCACAGTTTCCAGTCTATCCACATCtatatatttcttctgtttcaTGCACAGCAGTTGAGTATATAGCAAAACTGATCTTCCATAAGAGTTTGACTGGATGATCtctatttttcttctattaaaaaagcacatttttataaGCTATACAGTTATTAATAATAGCATAGTGCCTATTGCACAGTATGTTTTAAAGGTATGTCTTTTTGCTGAATTATTTTGGAGGAACGAAAAGGGACTCTAAAACACTATGCCAGCATTTGGCCAGATGAAAGAGGGACAAACgtgatatatataaatatatataaaaatgcttttttgaactaaataaataacaaaaggaaCCTACTTTGGTCCACATTCAGTCAGCCTCAATGCCTATTTAGAGTTAAGCATAGTGCAGTTTATGGAGGTTTCATAGGTGTGTGTTTTCAGCACAGATTTGGCTGTATGTTATTCTAACTGCAATCTGCTAAAGATGTTTAGGTTGAATATCAAAATGCCAGTGATGAAGAAACAATGACAAACATCTAGGTTTTTGTTAGAATTACTGATGGTTAACAACATAAGgagatatttatgtattgtttaaattatttgtggATCATATGtaattctgtaaaaataaatagaaactgCAATACAAAAT

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149381 lncRNA downstream 49597 22984184 ~ 22984772 (-) True G119181
TU149380 lncRNA downstream 50803 22982866 ~ 22983566 (-) True G119180
TU149321 lncRNA downstream 176690 22834759 ~ 22857679 (-) True G119129
TU149317 lncRNA downstream 268343 22762360 ~ 22766026 (-) True G119128
TU149243 lncRNA downstream 367159 22666929 ~ 22667210 (-) True G119072
TU149444 lncRNA upstream 62118 23109601 ~ 23111520 (-) True G119235
TU149635 lncRNA upstream 1471930 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 1518663 24566146 ~ 24568299 (-) True G119384
TU149701 lncRNA upstream 1789304 24836787 ~ 24842121 (-) True G119426
TU149749 lncRNA upstream 1997468 25044951 ~ 25045344 (-) True G119466
AMCG00018866 mRNA downstream 1559 23012422 ~ 23032810 (-) True AMCG00018866
AMCG00018868 mRNA downstream 23116 22998635 ~ 23011253 (-) True AMCG00018868
AMCG00018867 mRNA downstream 41132 22987225 ~ 22993237 (-) True AMCG00018867
AMCG00018862 mRNA downstream 106934 22899552 ~ 22927435 (-) True AMCG00018862
AMCG00018863 mRNA downstream 147325 22876661 ~ 22887044 (-) True AMCG00018863
AMCG00018865 mRNA upstream 8837 23056320 ~ 23083052 (-) True AMCG00018865
AMCG00018869 mRNA upstream 39278 23086761 ~ 23087315 (-) True AMCG00018869
AMCG00018871 mRNA upstream 775983 23823466 ~ 23827059 (-) True AMCG00018871
AMCG00018870 mRNA upstream 813029 23860512 ~ 23873031 (-) True AMCG00018870
AMCG00018872 mRNA upstream 847009 23894492 ~ 23928438 (-) True AMCG00018872
TU149337 other downstream 228031 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 920674 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 2336542 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2428549 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 2027915 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2087288 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2138724 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 3765997 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 4183390 27230873 ~ 27242574 (-) True G119893

Expression Profile