RNA id: AMCG00018865


Basic Information

Item Value
RNA id AMCG00018865
length 3451
RNA type mRNA
GC content 0.52
exon number 24
gene id AMCG00018865
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 23056320 ~ 23083052 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGCTTCTTCATCACCTTCCAGTGACGAACAGTCTGGCCCTTTAACTCTTTCCGGCTTGACACGCCGCGCATGCGCACTCCGGGCACTCCGATTTCCCCCATCATGGCGGCGAGGGGCCATGTGCAAGACCCTAACGACAGGAGGCTCAGACCCATTTACGACTATCTGGACAATGGCAATAATAAGATGGCAATCCAGCAGGCTGACAAACTACTTAAGAAGCACAAGGACCTACACTGTGCAAAGGTCTTGAAGGCGATTGGCTTACAGAGGACCGGCAAGCAAGACGAGGCCTTCTCCTTAGCGCAGGAGGTTGCTGTGCTCGAACCCACGGATGACAACTCTCTGCAAGCACTGACCATCCTGTACAGGGAGATGCACAGGCCGGAGTTGGTGACGAAGCTGTATGAAGCGGCGGTGAAGAAGGTGCCCAGCAGCGAGGAGTATCACTCTCACCTGTTCATGGCGTACGCACGTGTTGGAGAGTACAAGAAGATGCAACAGGCTGGAATGGCACTTTACAAGATCGTTCCTAAAAATCCCTACTACTTCTGGTCTGTGATGAGTTTAGTGATGCAGGCAATCTCAGCAGATGATGAGAAGTTGTCCAAAACCATGTTCCTGCCTCTAGCTGAGAGGATGGTGGAAAAGATGGTGAAAGAGGAGAAGATCGAGGCAGAAGCCGAGGTCCAACTGTATTTTATGATTCTGGAGAGGCTAGGCAAGTACATGGAGGCCCTGGAGGTGGTGAGGGGGCAGCTGGGAGAAAAGCTGACGAGCGAGTTACAGAGCCGGGAGAACAAGTGCATGGCCCTCTACAAGAAACTGGACCGCTGGCCCGAGTGCAACGCACTCTCCAGGAAACTGCTGTTAAAGAACCCAGATGATTGGCAGTTCTACCTGTCGTACTTTGATTCACTCTTCCATGTAATCGATGAGTCCTGGTCACCACCTGAAGAGGGAGAACACTCGGTGGAAGGGGAGGTGGAGGCCACTGTGGCCCAGGCTATCCGGTTTGTAGAGGACAGGATTTGCATGGAGGATGGGAAGGGGACACGCCAGCTACGAGGACCTTACCTGGCCAGGCTGGAGCTGATCCAGAGATTGCGGCACCGGAGCAGCCCAGAGGAGCACCAGCTAGGAGATCCTCTGGAGCTGATGTTCCAGTACTTTGTGAAATTTGGAGATAAGCCCTGCTGTATCTCAGACCTCAAGATTTACCTGGACCTCTTGACACCTGACCAGCATGTACAGGGCAGTGTGGCGCTGCCTGCCGACACCAAAGCCCTGCAGAGGCACTTGTGTGTGGTGCAGCTGGCCCGCTCCCTGGGCCTCCACCATAGCATGGACACCCCCCACAGACTGGGCCTGATCGACGAGCTCAAGGCCAGGTACCGGCACGGCCTGGAATTTGGAAAGTCCTGCTTGAAGACAGAGCTGCAGTATTCGGACATGTATTGTCTACTGGCCGCTCACCTGTACGTCGATCTGTGGAAGGAGACCGGCGAGGAGTGGCGTCTGTGGCAGTGTCTGGGCCTGCTTGAGGAGGGCCTGACTCACAGCCCCTCCAACGCTCAGTTCAAGCTGCTGCTAGTGCTCATCTTCTGTGGGCTTGGGGCGTTCGAGCCCGTGGTGGACCTCTACTCCAGCCTTGATGCCAAGCACATACAGCATGATACCATAGGGTACCTGTTGACACGCTATGCAGGGTCTTTGGGCCAGTTTGCTGCTGCTTCCCAGTCTTGTAATTTCTCGCTCAGGTTTTTCCACTCAAACCAGAAAGATaccTCAGAATATATCATTCAAGCTTATAAGTACGGTGCGTTTGAGAAAATCCCTGAGTTCATTGCCTTCCGGAACAGACTAAACCGCTCGCTGCATTTCGCTCAAGTCCGCACAGAAAGGATGCTGTTAGACCTTTTCCTTGAGGCAAATATATTGTCCAGCCTAGAGGAGAATGTAAAGTCCATGGGCCTGTGTCCAGAGGAGGAGGACATTCCCTGGGCTGACATGAGGGACAATCGAGATTTGACTGTTCTGACCAGCTGGGATCCCAAGGACCGGCAGCTATCTGAGGAGCAGCGCCGGCTCTCTCTGGAGGAGGAGGCCCTGTGGCTGCGCATCCGCTCCCTCACGCTGCGCCTGGCGGGCTCGCTGGCTGGCCTGTCCCATCCCGTCACACCAAAGAACTCGGAGAAGGCGTCCGAAAACGGCATGGCCTCCAAACCCGACACACTGCGCTCGCTGCTGAAACAACTGGAAACCGCGCTGGAGACGGGGAGGGCCTTCACTGAGCGCAAAATCCAGTACCCCTTCCTGGGCCCTCCCTCCACCCGGCTATCTCCTGCCCTCGCAAGCGGGAGCTGCCAGTGTCAAGCGAGCGCCTTCCACCTAGCCAGTGATCTCCACGACCTTGACACCCTGGGCCTGGAAGATACAACTGAGGTCCAAACACGGATAGGGAACAGTTTCAAATCTTTACTAGCACAGCTGAAAGagatatttaataaatgcaaaggCGATCTACTGGAAGTTAAAGACAGTCGATGTAAAGCCATGCCGGCACTTTTAGAAAACCTAGTGTTCTTCGTAGAGACTGTGTGTGTGGTCCTGTGGGTTTCCAGTTACTGTGGTAGTGTCCTCCGACCCCTCAAATCCAGTatacagaaaaagaagaagaagaaaaaggatgCCAGCGCAACTACGCCGGCGGTGTTCAGCGGTTACCAGGAGTACACAGCGGCGTTACAGACCCTGCTCTCCGAGGTCCTCGATCACGTCAAGGGCCTGGAAATCGCTCTGACTGCACTGAAGCTGGAGGGGCTCACACTGGAGGAGCACGCACTCTCCGAGGATGAGCAGAAGTTTACAAAGACTGTGATGGAGAAGGTACAGAGCAGCTACCTGAGGTCACTGCAGGAAGTGGGCGAGCTGTTGAAGAAAAGGGCGGACACCATGAAGAGCCTGAAGATCTGATGGGGGGACGCaccatcttcctcctcctcctcctcctcctcctcctccaccaccacacCTGCGAAATCCAGAACTTCCTcttcacacacacgcatgaaGGACTTGTAATATtgaaaggagagagaagaaaaaaaaaaaaaaagcgtttTTAGAATaattactgaaataaattattgtacATAGTCCACAGAAAATTCCTTGACAggaaattcacttttttttttttccttttttatatacatattcatgaGCATATAGAACCGCTTCCTATACTATCCCAAACCCAGAGCACTGGGACAGGAAGTTGAGTACAGTTAGCTCTTATGTATAGTCCTATATGTAGCGCCACTCTTTAATAAAAGAGACCGGAAGAGCCTTTATGGGTTgtggtgttttaatttattgagaGACTTTAAGGagctgaaactttttttttttcccttcatagGAGCTTGCAGAAACATTATGCTGGG

Function

GO: NA

KEGG:

id description
K17973 NAA25, MDM20; N-terminal acetyltransferase B complex non-catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149381 lncRNA downstream 71548 22984184 ~ 22984772 (-) True G119181
TU149380 lncRNA downstream 72754 22982866 ~ 22983566 (-) True G119180
TU149321 lncRNA downstream 198641 22834759 ~ 22857679 (-) True G119129
TU149317 lncRNA downstream 290294 22762360 ~ 22766026 (-) True G119128
TU149243 lncRNA downstream 389110 22666929 ~ 22667210 (-) True G119072
TU149444 lncRNA upstream 26549 23109601 ~ 23111520 (-) True G119235
TU149635 lncRNA upstream 1436361 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 1483094 24566146 ~ 24568299 (-) True G119384
TU149701 lncRNA upstream 1753735 24836787 ~ 24842121 (-) True G119426
TU149749 lncRNA upstream 1961899 25044951 ~ 25045344 (-) True G119466
AMCG00018864 mRNA downstream 8837 23034369 ~ 23047483 (-) True AMCG00018864
AMCG00018866 mRNA downstream 23510 23012422 ~ 23032810 (-) True AMCG00018866
AMCG00018868 mRNA downstream 45067 22998635 ~ 23011253 (-) True AMCG00018868
AMCG00018867 mRNA downstream 63083 22987225 ~ 22993237 (-) True AMCG00018867
AMCG00018862 mRNA downstream 128885 22899552 ~ 22927435 (-) True AMCG00018862
AMCG00018869 mRNA upstream 3709 23086761 ~ 23087315 (-) True AMCG00018869
AMCG00018871 mRNA upstream 740414 23823466 ~ 23827059 (-) True AMCG00018871
AMCG00018870 mRNA upstream 777460 23860512 ~ 23873031 (-) True AMCG00018870
AMCG00018872 mRNA upstream 811440 23894492 ~ 23928438 (-) True AMCG00018872
AMCG00018873 mRNA upstream 857965 23941017 ~ 24002217 (-) True AMCG00018873
TU149337 other downstream 249982 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 942625 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 2358493 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2450500 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 1992346 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2051719 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2103155 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 3730428 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 4147821 27230873 ~ 27242574 (-) True G119893

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004715 False 4415 mRNA 0.48 24 NC_007121.7 3364650 ~ 3394290 (-)
grasscarp (Ctenopharyngodon idella) CI01000168_01179151_01196542.mRNA True 3203 mRNA 0.52 23 CI01000168 1179151 ~ 1196901 (+)