RNA id: AMCG00018866


Basic Information

Item Value
RNA id AMCG00018866
length 3621
RNA type mRNA
GC content 0.56
exon number 21
gene id AMCG00018866
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 23012422 ~ 23032810 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGTCTGGCAAAAGTTGTCAGCCGTGCCCAGAATGGAGACGAGATCAGGGATCTAGTGTCTGGCAGCTcttttgtgttaatttactgAAAAGCACATCTCCAAAGAACTAGGGAGGGAATGCTGTGATGGGTGCTGCCAGACTTTTCCTGTCCCGCAGGCTCCTCCTGTCCCGAGATCCCAGGGGGCTAAGCTTGGTGCCATGGCGGCTAACACAAGCTGCCCTCCTGAAGCCCCCAGTTGCCAGGCACTACAGAGCTGTTATTTTTGACATGGGAGGAGTGATTCTGCCATCGCCATACAAAAAAGCTGCAGAATGGGAACTGCGCCATGGTGTACCGGCTGGCACTATCATCAAGGCCATCAGGGCTAGGGGTGAGAACAGTGCCTGGATGAAGTACATGAGAGGAGAGCTGAGTGCTGCACAGTTCGTGGATGCGTTTGGAAAAGAATGCACAGCGATAGCTGGCCACAGTGTCCCTGCCAGCTCCTTCCTGTCTGACCTCACCATGGGACCCATGGCCCAGCAGCTGCCCGCCATGACCGAGGCCATCCGTCGTATCCGGGCTGAGGGCCTGAAGACGGCCCTGCTCAGCAACAACTTCTTTCTGCAGGGCGGAGACACCTATCTGCCTGTGGAGCGTGCCCAGTTCGACGTGATTGTGGAGTCCTGTATTGAAGGGATATGCAAGCCCGATCCCCGTATTTACCAGCTGTGTGTCGACCGCTTGGGAGTCCTACCACAGGACGCCGTGTTTCTCGACGACGTCGGACAGAATGTGAAGGCAGCCGCACAGCTGGGAATCCGCTCGATCAAGGTTGAAGACCCATTGACAGCAATAGAGGAGCTGCAAGGCTTGCTGGGATTCTCTCTGTCAGGGTTCGTTCCTGGCACCATCAGCCCTACTATGGAACTCCCCACTGACCGGCTTAGACAGTACTTACAGAACACGCTGTCTCTCGGGGCCACAGTAGCATTGGATTTGCGACAGTTCAGCCATGGCCAGTCCAACCCCACCTACCTGGTGTCTATCGGGGGGCGCCAACTTGTTCTGAGGAAGAAACCCCCAGGGCCATTGCTGCCCTCTGCCCATGCTGTGGAGAGGGAGTTCAGGGTCCTGAAAGCCCTGGGGAAGGCTGGCATTCCTGTGCCCAAAGTGATCGCCCTGTGCGAGGACTCCAGtgtAATTGGCACCCCCTTCTACCTGATGGACTACTGTCCTGGGAGGATATTTAAGGACCCCTTGCTGCCAGGGATGACCAGCGAGGAGAGGAAGGAGGTGTACAAGGCCATGAGCCGCGTCCTCTGCCAGATTCACAGCGTGGATGTCAAGGCGGCTGGCCTGGAGGACTATGGCAAATCTGGTAACTACGTTGCTCGGCAGGTGCGGACCTGGACCAAGCAGTACCGGGCCAGTGAGACGCACCGTATCTCGGCCATGGAGAGGCTGATCAAGTGGCTCCCGCAGCACCTTCCAACACATACGAAGACGACTGTGGTGCATGGAGACTTCAGGCTGGATAATCTGATTTTCCACCCGGAGAAGCCTGAGGTTGTGGCTGTGCTGGACTGGGAGCTGTCCACTCTGGGAGACCCCATCTCTGACCTGGCATACAGCTGCCTGGCACATTACCTACCTCCCAGTTTCCCAGTTCTCAAAGGGATGAGCCAGTGTGATCTGCCCGGGCTGGGCATCCCCAGTGCAGAGAAGGTCTTCACCCAGTACAGCCGGTGCATGGGTTTGGAGTGCTTGGACAACTGGAACATGTACATGGCCTTCTCCTTCTTCAGAGTGGCTGCCATCCTGCAGGGGGTCTACAAGCGCTCCTTAGAAGGGCAGGCAAGCTCTACCAGCGCTGCCAGTGTGGGGAAGATGGCGGAAGAGATGGCAGAGCTGGCTTGGGGTTTCGCCACCAAGGAGGGCTTCCGGGTCTTCAAATCCATGCCTACAGGAGCTCCGGGCACAAGCCCCCGTAGGAGCTTCAGCGGCTGGAGCCCAGCCCTAACCACAGCCCCCCGCCTGCCTGACAGCTTCTCCATTCGCCAGGCCTCGGGGGGTGACACCTCTCCTCCCCTAGATCCAGGTCATCTGATCATCTCCCCCACTAGCTTGCCACCCCACGTCCAGGCGCTGCACCGTCGCCTGCAGGAGTTCATGAGCGCCCGCATTCTCCCTGCAGAGCAGCAGCTGCGGGACCACCAAGCATCTGCGGACCGGTGGACCCCTCATTCAATGGTAGAGGAGCTTAAGGCTGAGGCCAGAGCAGCGGGACTGTGGAACCTTTTCATCCCAAGGGAGGTGGACACCAAGGCCCAGTTGGGGGTGGGACTGACCAACCTCGAGTACGCCCACCTGTGTGAGCTGATGGGCCACTCAGTGTTTGCCCCAGAGgtgtTTAACTGCTCTGCCCCAGACACTGGGAACATGGAGGTGCTCATTCGCTATGGGTCAGAGCAGCAGAAGGAGGAATGGCTTGTCCCACTGCTGAACGGCACGATCCGCTCCTGCTTCGCCATGACGGAGCCAAAGGTTGCTTCATCAGATGCAACAAACATTGAAGCCTCAATCACACAGGACAAAGATTCCTACATTATAAATGGGCATAAATGGTGGATATCAGGAGCCCTCGACCCTCGCTGTAAAATCTGTGTGTTCATGGGAAAGACCGACCCCAGCGCCTCGAGGCACAGGCAGCAGTCTATGATCCTGGTTCCCATGGATTCGCTGGGTGTGACAGTTGTGAGACCTCTCTCTGTGTATGGAACTGAAGACGCTCCAGCTGGCCATGCGGAGCTGCTGTTTGAGGGGGTCCGCGTGCCCCGCAGTAACCTGCTGCTGGGGGAGGGCCGGGGTTTTGAGATCGCCCAGGGCCGGCTGGGGCCAGGCAGGATCCACCACTGCATGAGGCTGGTGGGACATGCGGAGAGGGCCCTGGAGCTCATGAAGGACAGGGTGAAGGGAAGAGTGGCCTTCGGGAAGCCCCTGGCCGAGCAGGGGACTATCCTGGCTGACATTGCAAAGTCGCGCATGGAGATCGAGCAGGCGAGGCTGCTAGTGCTGAAGGCAGCCCACCTCATGGACACGGTGGGGAACAAGGTGGCAGCCCCGGAGATTGCCATGATTAAAGCAGTGGCCCCCAGCATGACTCTGCGGGTTGTTGACCGGGCCATCCAGGCTTTTGGAGCGGCAGGGCTGAGTAACGACTACCCTCTGGCCACCTTCTTCAGCTGGGCACGAGCCCTACGCCTGGCAGACGGGCCAGATGAGGTTCACCAGGCGGCGGTGGCCAAAATGGAGCTGAGGCGGTGACTCTGCACTTCTCAAGGGAGCCTGGGAAAGCAAACCCGAACTCAACCTGGATTTCCTCGTTTCCTTCATTCAGTTTAAATGCCGCTGAAGGCCTGTTTttataattgtctgtatgtgtttaCCTTCTCAGGCCTGGTAAAAAGGGTGAATGTGAGTTGTGTCCAAGGACCTTAAAGTTattaaatttgaatgtattaatttatgcccccctttttttaaatttataaaattacccttttacaaatgaaaatatttagtgcaataaaacagaataaacatatataattgtgttttgacTGAGAGTATTTAAT

Function

GO: NA

KEGG:

id description
K11729 ACAD10; acyl-CoA dehydrogenase family member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149381 lncRNA downstream 27650 22984184 ~ 22984772 (-) True G119181
TU149380 lncRNA downstream 28856 22982866 ~ 22983566 (-) True G119180
TU149321 lncRNA downstream 154743 22834759 ~ 22857679 (-) True G119129
TU149317 lncRNA downstream 246396 22762360 ~ 22766026 (-) True G119128
TU149243 lncRNA downstream 345212 22666929 ~ 22667210 (-) True G119072
TU149444 lncRNA upstream 76791 23109601 ~ 23111520 (-) True G119235
TU149635 lncRNA upstream 1486603 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 1533336 24566146 ~ 24568299 (-) True G119384
TU149701 lncRNA upstream 1803977 24836787 ~ 24842121 (-) True G119426
TU149749 lncRNA upstream 2012141 25044951 ~ 25045344 (-) True G119466
AMCG00018868 mRNA downstream 1169 22998635 ~ 23011253 (-) True AMCG00018868
AMCG00018867 mRNA downstream 19185 22987225 ~ 22993237 (-) True AMCG00018867
AMCG00018862 mRNA downstream 84987 22899552 ~ 22927435 (-) True AMCG00018862
AMCG00018863 mRNA downstream 125378 22876661 ~ 22887044 (-) True AMCG00018863
AMCG00018858 mRNA downstream 136662 22871159 ~ 22875760 (-) True AMCG00018858
AMCG00018864 mRNA upstream 1559 23034369 ~ 23047483 (-) True AMCG00018864
AMCG00018865 mRNA upstream 23510 23056320 ~ 23083052 (-) True AMCG00018865
AMCG00018869 mRNA upstream 53951 23086761 ~ 23087315 (-) True AMCG00018869
AMCG00018871 mRNA upstream 790656 23823466 ~ 23827059 (-) True AMCG00018871
AMCG00018870 mRNA upstream 827702 23860512 ~ 23873031 (-) True AMCG00018870
TU149337 other downstream 206084 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 898727 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 2314595 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2406602 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 2042588 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2101961 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2153397 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 3780670 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 4198063 27230873 ~ 27242574 (-) True G119893

Expression Profile