RNA id: AMCG00018867


Basic Information

Item Value
RNA id AMCG00018867
length 1701
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00018867
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22987225 ~ 22993237 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGTTTCACCCAAATATCACCGGTGTGGAGGCGGAAAACCTGCTGCTGACTCGAGGTGTGGATGGGAGTTTTTTGGCCCGGCCTAGCAAGAGTAACCCCGGGGATTTCACTCTGTCAGTGAGACGAAATGGAGCCGTCACCCACATCAAGATCCAGAACACGGGGGACTACTATGACCTGTACGGGGGGGAGAAGTTTGCCACGCTGGCTGAATTAGTACAATATTACATGGAGCACCACGGGCAGCTGAAAGAGAAGAACGGAGATGTCATCGAGCTGAAGTACCCACTGAACTGTGCCGATCCCACGTCTGAGAGATGGTTCCACGGGCACCTGTCAGGCAGAGAGGCTGAGAAGCTGCTCACGGAGAAAGGGAAGAACGGCAGTTTCCTGGTGCGAGAGAGCCAGAGCCACCCCGGGGACTTTGTGCTGTCTGTAAGGACGGGAGATGACAAGGGGGAGAGCAGCGATGGCAAGCCTAAGGTCACGCATGTCATGATCCGCTGCCAGCATGACCTCAAGTACGATGTGGGCGGAGGTGAGAAGTTTGACTCCCTGACTGACTTGGTGGAACATTATAAGAAGAATCCGATGGTGGAAACGTTGGGCACTGTGCTCCAGCTCAAACAGCCTCTGAACACAACGCGGATCAACGCAGCCGAGATCGAGAGCCGAGTTCGGGAGCTGAGCAAGTTGGCTGAAGCTACGGACAAGGTTAAGCAGGGCTTCTGGGAGGAGTTTGAGACTCTGCAGCAGCAGGAGTGCAAGCTGCTGTACAGCCGCAAAGAAGGACAGAGAGCCgagaataaaaacaagaacCGATACAAGAACATCCTGCCCTTTGATCATACGAGGGTAGTGCTAAATGACGGGGACATGAATGAGCCGGGCTCAGATTATATCAACGCTAACATCATAATGCCTGAGTTTGAGACAAAGTGTAACAACACCAAGTCCAAGAAGAACTATATTGCCACACAAGGTTGCCTGCAAAACACTATTAGTGACTTCTGGAGAATGGTGTTCCAGGAGAACTCTCGTGTGATTGTCATGACCACCAAGGAAGTGGAGAGAGGAAAGAGTAAATGTGTGAAGTACTGGCCGGACGTGTCCGCGCTGAAGGAGTACGGAGCGATGCGCGTCCGCAACGTCAAAGAGACCTCGGCGCACGACTACAACCTCAGAGAGCTGAAGCTATCGAAGGTTGGGCAGGGCAACACCGAGCGGACCGTGTGGCAGTACCACTTCCGAGCCTGGCCAGACCATGGTGTTCCTGGTGACCCGGGTGGTGTGCTAGACTTCCTGGAGGAGGTCAATCTCAAACAGGAGAGCATCCTGGAGGCCGGGCCCATCGTGGTGCACTGCAGTGCTGGGATTGGACGAACAGGAACATTTATTGTAATAGACATTCTGATTGATATAATCAGAGAAAAAGGGGTAGACTGTGACATCGACGTTCCCAAAACCATCCAGTTGGTGCGATCGCAGCGGTCAGGAATGGTGCAGACGGAGGCCCAGTACAGGTTTATTTACATGGCTGTGCAGCACTATATTGAGACTCTGCAACGCAGGATCGAAGAGGAGCAGAAGAGCAAAATTAAAGGGCGGGAGTACACCAACATAAAGTATTCGCTCTCAGACCTGACAGGGGGAGACCAGAGCCCGTTACCGCCCTGCACCCCCACGCCAACCTGTGCCGAG

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K07293 PTPN11; tyrosine-protein phosphatase non-receptor type 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149381 lncRNA downstream 2453 22984184 ~ 22984772 (-) True G119181
TU149380 lncRNA downstream 3659 22982866 ~ 22983566 (-) True G119180
TU149321 lncRNA downstream 129546 22834759 ~ 22857679 (-) True G119129
TU149317 lncRNA downstream 221199 22762360 ~ 22766026 (-) True G119128
TU149243 lncRNA downstream 320015 22666929 ~ 22667210 (-) True G119072
TU149444 lncRNA upstream 116364 23109601 ~ 23111520 (-) True G119235
TU149635 lncRNA upstream 1526176 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 1572909 24566146 ~ 24568299 (-) True G119384
TU149701 lncRNA upstream 1843550 24836787 ~ 24842121 (-) True G119426
TU149749 lncRNA upstream 2051714 25044951 ~ 25045344 (-) True G119466
AMCG00018862 mRNA downstream 59790 22899552 ~ 22927435 (-) True AMCG00018862
AMCG00018863 mRNA downstream 100181 22876661 ~ 22887044 (-) True AMCG00018863
AMCG00018858 mRNA downstream 111465 22871159 ~ 22875760 (-) True AMCG00018858
AMCG00018855 mRNA downstream 124446 22861091 ~ 22862779 (-) True AMCG00018855
AMCG00018857 mRNA downstream 136503 22839532 ~ 22850722 (-) True AMCG00018857
AMCG00018868 mRNA upstream 5398 22998635 ~ 23011253 (-) True AMCG00018868
AMCG00018866 mRNA upstream 19185 23012422 ~ 23032810 (-) True AMCG00018866
AMCG00018864 mRNA upstream 41132 23034369 ~ 23047483 (-) True AMCG00018864
AMCG00018865 mRNA upstream 63083 23056320 ~ 23083052 (-) True AMCG00018865
AMCG00018869 mRNA upstream 93524 23086761 ~ 23087315 (-) True AMCG00018869
TU149337 other downstream 180887 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 873530 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 2289398 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2381405 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 2082161 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2141534 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2192970 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 3820243 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 4237636 27230873 ~ 27242574 (-) True G119893

Expression Profile