RNA id: AMCG00018871


Basic Information

Item Value
RNA id AMCG00018871
length 3594
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00018871
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 23823466 ~ 23827059 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGGGCTGGAGCAGTTTGAGCCTCAGATTAATAGCAGAAACGCTGGCCAAGGAGAGAGAAACTTAAACCAGCCTAGACTGAACATGAGCTCCCACTACAAGAGCCCGGCTTTCCACGCCGCGGGGCCGCCTGGAGCGGTGGAGCAGGGCATGGGTCCCCTGAACGAGCCTCCGATGCTGGGACTCAACATGAACCTGAACGGGGAGCAGTACGGCTTCCACCCGCGGGGCCACGCTGAAATGCACGCCGGGGGGCTGCAGCAACAGCCAATGCACGGCTTCTTTAACAACCAGCAACCTCACCACGGCCACCCTCATGGCCACCACCCCCACGCCCATCAGCACCATCCTCATTTTGCGGGGAATTTCAACGGCCCGGACCCCAGTGCGTCGTGTCTGCACGGGGGCCGGCTTATGGGTTACAACAACAGTGCCATTGGACCCCAGCAGAACTTTGCAGAAGGCTTCGAGCCCCTTGCCGAAAATCAAACGGGGGAGGGCTTtggccagcagcagcagcagcagcagcagcaacagcagcagcgcTCGAACAACATGCCCGAGTTCCAGCACCACAGTTCCCAGAACAGCAGCCACGCAGTCCCAGCGCCCTGCCTCCCGTTGGATCAGTCGCCTAACCGGGCTGCTTCCTTCCACGGGCTTCCTTCCTCCACCTCCTCGGATGCCCACAGCCGAGAGCCCAGGAGGATGCCCCCGCAGGGAGGCGTGGAGAATTTGGAATACAGTTACCCCAGCGAAACCCCTTCGGGACACTTTGATGTGCCTGTATTTTCCCCCTCTGAATCCGAATCCCAGCTTCCCCATTACGGGCCAGGCAGACAGGTAGCTGGTAGCAGCTTCCCTGGCAACCCCGCCATGCCAAGAGCACCAGGCATGCCAGGGATTTCCAAAgtccaccagcagcagcagcagccgcagcaGCATGGCGTTTTCTTTGAAAGGTTTGGAAATGGACGGAAGATGGCTGTGGGCATGGAGCCGGGGGTCAATGCCAGGCACCCTTtgatgcagcagcagcaggctggCTTGCTTGCCAGACAGAACTCTTGCCCTCCAGCTATTCCTAGGCCGCCCCAGTCTGAGTCCAGCACTGCCAACCCCGGCATGCAGGACAATGGAGTGATGATGCCCGGCCAACACAACCAGTTTGAATATCCCATTCACAGACTGGAGAACAGAAATATGCATCCGTACGGAGACCCTATGTTTAATATGCAGCAGCAGCCGCCTCAGCAGCCTCCAAATCAAAGACTGCAACACTTTGACTCGCCTTATTTGAATGTGGCAAAGAGGCCCAGGTTTGATTTCCCAAATAACCACAACGCTGAGAACTGTGCTACCTGGAACAGCAACTTGCACAACCCGCCAGGCATGGAGAACCACCTTTCTCCATCTGCCTACCCTGGTCTTCCTGGGGAGTTCACCCCCCCTGTTCCAGAAGGATTCCCACCAGGCCCCCCTCTCCAGCATGCAGGCCCAGATCAACAATCCATGCAGCAACGCCAAAACGCAGCTATGATGATTAAACAAATGGCTTCCAGAAATCAACAGCAGAGAATGAGACAGCCTAATCTCCAGCAGTTGGGTCACCATGGGGATGTCAGTCAAAACAGCATGGTGCATGGGGGCCAAGTGGGAAATATGCCTCAGCCAAACTTTGAAAGGGAGGGCGGGGGAAGGATGGCCAGCTTTGATTCCCAGAACCCCCACATGCCTCAGGAGAATACCTGGTTTCCAGGGCCCCATCAGCCAGGAGAAATGCTCCAGCGGAGAATGGGAAGCTCCAGCGTCCCTGGGGAGGCCAGCCCTCATGACATGGGTCTGCAGCAGAATGGCTCCAATATGCTTTTTCGGCCTGGTGTCAATGGAATGGGCATGCAGGAGCCAATGAGGATGCCAGGAGATGGCCATGTACAGGCTTTGCATTCGCCTGGCATGCACTCACAGTTTGGAAATAACATGGGCAGTCTTTCACAAATGCAGTCTCCTGGGGCAGGCGTTGGGCTTCCAAACGCACCCTCAGACCGGAGACCCGGTGATTTCCCTGCACCCCCTATGGGGGCACAACCCAGTTTTCCTTTTGGAGCGAACCGGCAGGGCCCCCCCCACAACAACCCCCCAGGGGTAAATGCATCACCAGGAAACTACCCTCCCCAGTCTGAATTTACCCCAGGACAGCGCCCCTCTGTCAGTAAGTTGGGGGCCCTGTCTCTTGGTTCCTTCAGCAAAACCAGTTCAAAAGATAACATGTTTGGTCAGAGTTGCCTGGCAGCTCTTTCCACGGCTTGCCAGAATATGATTGCCAGCCTGGGGGCCCCAAACCTCAAtgtaacatttaacaaaaagaGCCAAAATGAGGGCAAGAGAAAACTGAGTCAAACTGAGCAGGACATAAATAGCAGCAGCACGAGTGGAAATGGCAACGCTGGGCCGGAGTATTTCCAGAGCAGTGCTTCTCAGAACAGTCAGATGCCCGGTGCTGGGAATAGTAACAGTAAGCCTACAGGTCAAAGTGGCACAAGCCAGCCGGTTCAGGGGGAAGCCACGACCCTCTCCCCAAACTACAATATGGACCCTACCCCGGGGAGTGAGGGGAAACCAACAacagggagtgggagagggagggggaggagaaaaAGGGACAGTGGGCATGTGAGCCCCGgaatttttttcccctctgacAGTGGCAACCCTGTTGTAAGTCCAGGCCAGCAGGGGCCACCTGCCAGCACTGCTGAGCGAGGTGGTGGCACACCCCACGAAAAGCCCCTCACCTCCCCTTCCTGGGGAAAGGGAAGCGATTTGCTTCTGAGTGACCAGCCAGATCTCATGTCTTCTCTGGATAGTGGGATCCAAAGTGTCACCAAGTCCGACGGCAGCTCGCCGCATGTGGACTTTCCAGACGACGTCAGTACCAACTATGGCAACGAAGACGAGGTGTCCTCCAGCTCGGACAACAACATGTCCAAACCTAACCGGAGCCCTATGGTCACAAGCTCCCCAAAAATCCAACGAGGAGACCACGGACTGATGAATGGACAAAAGCAAATGGGTCTCAGCATTCTAAATAACACTACCTCTACCCCAGACAGCTACGGGCTAAACAACAGTGGGGCTGGGCATCCTGGTACCCCTGGCATGGAGCAGGTCCGCACACCGTCAAGCACATCCACGCAGGATGAGATTCACCCTTTAGAAATTCTCCAGGCACAGATTCAGCTTCAGAGGCAACAGTTCAGCATATCAGAAGATCAGCCTCTGGccatgaaaaacaagaaagctGACTGTCCCAGTCAGAACGCAGACAATGAGCTGCCCAGTTGTGGCACGGACAGTGGCAAAAACGCCATGAGCACTATTGACCTTGATTCTCTGATGGCGGAGCAACATGCCACCTGGTATATTCCCAACGATAAGTCCTTGATCGAGGGACAGGAGGACGACAAGCCCATGGCACCCTGGGAAAAAACAAAGCcccagaataacaacaaagaagGTAACCTAATTTGCAATCTTAATGAAAGCATGATGAATTGGTTGCATGCCTGCTGTGTTTCCCTTAAcagttaa

Function

GO: NA

KEGG:

id description
K22543 MN1; transcriptional activator MN1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149444 lncRNA downstream 711946 23109601 ~ 23111520 (-) True G119235
TU149381 lncRNA downstream 838694 22984184 ~ 22984772 (-) True G119181
TU149380 lncRNA downstream 839900 22982866 ~ 22983566 (-) True G119180
TU149321 lncRNA downstream 965787 22834759 ~ 22857679 (-) True G119129
TU149317 lncRNA downstream 1057440 22762360 ~ 22766026 (-) True G119128
TU149635 lncRNA upstream 692354 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 739087 24566146 ~ 24568299 (-) True G119384
TU149701 lncRNA upstream 1009728 24836787 ~ 24842121 (-) True G119426
TU149749 lncRNA upstream 1217892 25044951 ~ 25045344 (-) True G119466
TU149859 lncRNA upstream 1435303 25262362 ~ 25333175 (-) True G119557
AMCG00018869 mRNA downstream 736151 23086761 ~ 23087315 (-) True AMCG00018869
AMCG00018865 mRNA downstream 740414 23056320 ~ 23083052 (-) True AMCG00018865
AMCG00018864 mRNA downstream 775983 23034369 ~ 23047483 (-) True AMCG00018864
AMCG00018866 mRNA downstream 790656 23012422 ~ 23032810 (-) True AMCG00018866
AMCG00018868 mRNA downstream 812213 22998635 ~ 23011253 (-) True AMCG00018868
AMCG00018870 mRNA upstream 33453 23860512 ~ 23873031 (-) True AMCG00018870
AMCG00018872 mRNA upstream 67433 23894492 ~ 23928438 (-) True AMCG00018872
AMCG00018873 mRNA upstream 113958 23941017 ~ 24002217 (-) True AMCG00018873
AMCG00018874 mRNA upstream 195613 24022672 ~ 24026598 (-) True AMCG00018874
AMCG00018875 mRNA upstream 242895 24069954 ~ 24087249 (-) True AMCG00018875
TU149337 other downstream 1017128 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 1709771 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 3125639 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 3217646 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 1248339 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 1307712 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 1359148 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 2986421 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 3403814 27230873 ~ 27242574 (-) True G119893

Expression Profile