RNA id: AMCG00018872


Basic Information

Item Value
RNA id AMCG00018872
length 660
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00018872
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 23894492 ~ 23928438 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCACGGCCCAATCGGGTGCGTCCCTGCTCTGTCTCCTCACTGGAGCGAGCGTCTCCCTCTCTGGCCAATCAGCGACGGCAGAAGGCGGGATTCAGTCGACATTGAAAAAGCGCGGTGACGTCAGCGCCTGCGCAGCCGCAGCCGGTGAAGAGAAGATGGTGCTGATTAAGGAATAtCGTGTGGTTTTACCCTGCTCGGTGGAAGAGTATCAAGTTGGGCAGCTCTTCTCAGTGGCGGAGGCGAGTAAGAACGAGAccggaggaggagaaggaattGAAGTCCTAAAGAATGAGCCCTATGAAAAGGAGGGGGAGAAAggacagtacacacacaaaatctacCATCTAAAGAGTAAAGTTCCCGGATTTGTAAAGATGATTGCACCAGAGGGGGCCCTGGTGTTTCATGAAAAGGCATGGAATGCATATCCTTACTGCAGGACAAGTAAGTGCCCAGCATATGTGTATCTGTTAAAATCTGCTTCAGAAATCCAAAATGAATACATGAAAGATGACTTCTTTATTAAGATTGAAACATGGCACAAACCAGATATGGGAGCACTAGAAAACGTTCATGAGCTGGATGCCGACACATGGAAGAATGTTGAAGTAGTACCTATTGACATTGCAGATAGAAGTCAAGTAGACCCTGGAGGTTAG

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0015914 phospholipid transport biological_process
GO:0015695 organic cation transport biological_process
GO:0015697 quaternary ammonium group transport biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0008525 phosphatidylcholine transporter activity molecular_function
GO:0008526 phosphatidylinositol transfer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149444 lncRNA downstream 782972 23109601 ~ 23111520 (-) True G119235
TU149381 lncRNA downstream 909720 22984184 ~ 22984772 (-) True G119181
TU149380 lncRNA downstream 910926 22982866 ~ 22983566 (-) True G119180
TU149321 lncRNA downstream 1036813 22834759 ~ 22857679 (-) True G119129
TU149317 lncRNA downstream 1128466 22762360 ~ 22766026 (-) True G119128
TU149635 lncRNA upstream 590975 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 637708 24566146 ~ 24568299 (-) True G119384
TU149701 lncRNA upstream 908349 24836787 ~ 24842121 (-) True G119426
TU149749 lncRNA upstream 1116513 25044951 ~ 25045344 (-) True G119466
TU149859 lncRNA upstream 1333924 25262362 ~ 25333175 (-) True G119557
AMCG00018870 mRNA downstream 21461 23860512 ~ 23873031 (-) True AMCG00018870
AMCG00018871 mRNA downstream 67433 23823466 ~ 23827059 (-) True AMCG00018871
AMCG00018869 mRNA downstream 807177 23086761 ~ 23087315 (-) True AMCG00018869
AMCG00018865 mRNA downstream 811440 23056320 ~ 23083052 (-) True AMCG00018865
AMCG00018864 mRNA downstream 847009 23034369 ~ 23047483 (-) True AMCG00018864
AMCG00018873 mRNA upstream 12579 23941017 ~ 24002217 (-) True AMCG00018873
AMCG00018874 mRNA upstream 94234 24022672 ~ 24026598 (-) True AMCG00018874
AMCG00018875 mRNA upstream 141516 24069954 ~ 24087249 (-) True AMCG00018875
AMCG00018878 mRNA upstream 385995 24314433 ~ 24315050 (-) True AMCG00018878
AMCG00018877 mRNA upstream 428500 24356938 ~ 24370642 (-) True AMCG00018877
TU149337 other downstream 1088154 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 1780797 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 3196665 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 3288672 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 1146960 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 1206333 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 1257769 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 2885042 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 3302435 27230873 ~ 27242574 (-) True G119893

Expression Profile