RNA id: AMCG00018874


Basic Information

Item Value
RNA id AMCG00018874
length 591
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00018874
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24022672 ~ 24026598 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGGCCCAGCTGAGGAGCCCACCCACCCAGATAAAGTCTGCAACAACGCGGCCTCCTCCGCGCTCAGCAGCCTGGGCCACGTGTACACCGCCATCGGGGACTACCCCAATGCCCTGGCCAGCCACAAGCAGTGCGTCATGTTGGCCAAGCAGTCCAAAGACCAGCTGTCGGAGGCGCGGGAGCTGGGCAACATGGGCGCTGTCTACATTGCCATGGGCGACTTCGACAACGCCGTGCAGTGCCACGAGCAGCACCTGGGCATCGCCAAGGCCCTGGGGAACAAGAGGGAGGAAGCACGGGCCTACAGCAATTTAGGGAGCGCCTACCACTACCGCCGCAACTTTGACAAGGCCATGTCTTACCACACACACGTGCTGGAGCTGGCACAGGAGCTAACCGAGCGACCCATTGAGATGCGGGCCTACGCCGGCCTGGGCCACGCCGCCCGCTGCATGCAGGACCTAGAGCGTGCCAAGCAGTACCACGAGCAGCAGCTCAGCATCGCCGAGGGCCTCAAGGACAGAGCGGCCGAGGGCAGGGCATCCTCCAACCTGGGTAAGATCAGTGAGGAAGTAccttatatatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149444 lncRNA downstream 911152 23109601 ~ 23111520 (-) True G119235
TU149381 lncRNA downstream 1037900 22984184 ~ 22984772 (-) True G119181
TU149380 lncRNA downstream 1039106 22982866 ~ 22983566 (-) True G119180
TU149321 lncRNA downstream 1164993 22834759 ~ 22857679 (-) True G119129
TU149317 lncRNA downstream 1256646 22762360 ~ 22766026 (-) True G119128
TU149635 lncRNA upstream 492815 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 539548 24566146 ~ 24568299 (-) True G119384
TU149701 lncRNA upstream 810189 24836787 ~ 24842121 (-) True G119426
TU149749 lncRNA upstream 1018353 25044951 ~ 25045344 (-) True G119466
TU149859 lncRNA upstream 1235764 25262362 ~ 25333175 (-) True G119557
AMCG00018873 mRNA downstream 20455 23941017 ~ 24002217 (-) True AMCG00018873
AMCG00018872 mRNA downstream 94234 23894492 ~ 23928438 (-) True AMCG00018872
AMCG00018870 mRNA downstream 149641 23860512 ~ 23873031 (-) True AMCG00018870
AMCG00018871 mRNA downstream 195613 23823466 ~ 23827059 (-) True AMCG00018871
AMCG00018869 mRNA downstream 935357 23086761 ~ 23087315 (-) True AMCG00018869
AMCG00018875 mRNA upstream 43356 24069954 ~ 24087249 (-) True AMCG00018875
AMCG00018878 mRNA upstream 287835 24314433 ~ 24315050 (-) True AMCG00018878
AMCG00018877 mRNA upstream 330340 24356938 ~ 24370642 (-) True AMCG00018877
AMCG00018879 mRNA upstream 360001 24386599 ~ 24455299 (-) True AMCG00018879
AMCG00018881 mRNA upstream 432892 24459490 ~ 24462910 (-) True AMCG00018881
TU149337 other downstream 1216334 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 1908977 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 3324845 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 3416852 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 1048800 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 1108173 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 1159609 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 2786882 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 3204275 27230873 ~ 27242574 (-) True G119893

Expression Profile